ViewGene
Locus Name:
GeneID:
Location:

GeneID:2735
TrivialName: PA14_08030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08030
PAO1 Ortholog Locus:PA0618
Sequence Length:888
Protein Length:295
Start: 690096
Stop: 690983
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04007.1|AE004498_2 (AE004498) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
Identities = 295/295 (100%), Positives = 295/295 (100%)
Sequence:
GTGATCATCGATCTTTCCCAGTTGCCGGAGCCAGAGGTTATCGAAAACCTCGATTTCGAGACGATTTACCAA
GAGCTGTTGGGCGACTTCCGCGAAGCCATGGCTGGCGAATGGACAGCGGAGGTGGAGTCGGATCCGGTTCTC
AAGCTTCTGCAACTGGCGGCCTATCGAGAACTGCTGCTGCGGGCGCGGATCAACGATGCGGCGCGGGCGGTG
ATGCTGGCATACGCCAGCGGTGCCGATCTCGACCAGATCGGTGCCGGCTTCAATGTGCAGCGTTTGCTGATC
AGGCCCGCTCAGCCCGAGGCGGTACCGCCGGTGGAGGCGCAGTACGAGAGCGACAAGTCGCTGCGCAATCGC
ATCCAGCTCGCGTTCGAGCAGCTATCCGTCGCAGGACCGCGGAACGCCTATATAGCCCATGCGCTGGGCGCG
GATGGAAGGGTGGCGGATGCCTCTGCGACCAGTCCGGCGCCCTGCGAAGTGCTGATCAGCGTGCTCGGGGTG
GAAGGCAACGGGCAGGCACCGGAAGCGGTGTTGCAGGCAGTGCGCCTGGCGCTGAACGCGGAGGACGTGCGT
CCTGTCGCGGATCGGGTAACGGTGCGCTCGGCAGGAATCGTTCCCTATCAGGTCAAGGCGCAGCTCTACCTG
TTTCCCGGCCCCGAGGCCGAGCTGATCCGTGCCGCCGCCGAGGCTTCGCTGCGCGACTACATTTCCGCCCAG
CGCCGCCTGGGCCGCGACATCCGGCGTTCGGCCCTGTTCGCCACCCTGCATGTCGAAGGCGTGCAGCGCGTC
GAACTGCAGGAGCCTGCGGCCGACGTGGTCCTGGATGAAACCCAGGCGGCCTATTGCACGGGGTACGCGATC
ACCTTGGGAGGCGTCGATGAGTAG
Translation:
MIIDLSQLPEPEVIENLDFETIYQELLGDFREAMAGEWTAEVESDPVLKLLQLAAYRELLLRARINDAARAV
MLAYASGADLDQIGAGFNVQRLLIRPAQPEAVPPVEAQYESDKSLRNRIQLAFEQLSVAGPRNAYIAHALGA
DGRVADASATSPAPCEVLISVLGVEGNGQAPEAVLQAVRLALNAEDVRPVADRVTVRSAGIVPYQVKAQLYL
FPGPEAELIRAAAEASLRDYISAQRRLGRDIRRSALFATLHVEGVQRVELQEPAADVVLDETQAAYCTGYAI
TLGGVDE*
AnnotationID:2743GeneID:2735
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:19
Gene Name:
Confidence Code:3
GeneProduct:putative phage baseplate assembly protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3948,pfam04865
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO70954.1| (AE016845) phage baseplate assembly protein [Salmonella enterica
           subsp. enterica serovar Typhi Ty2]
          Length = 302

 Score =  342 bits (878), Expect = 1e-93
 Identities = 182/300 (60%), Positives = 230/300 (76%), Gaps = 6/300 (2%)

>gb|AAN79438.1|AE016758_42 (AE016758) Phage baseplate assembly protein [Escherichia coli
           CFT073]
          Length = 302

 Score =  340 bits (873), Expect = 4e-93
 Identities = 183/300 (61%), Positives = 228/300 (76%), Gaps = 6/300 (2%)








 
Structural Features:
COG3948, Phage-related baseplate assembly protein 
CD-Length = 306 residues,  98.4% aligned
Score =  394 bits (1013), Expect = 8e-111
Identities = 201/301 (66%), Positives = 225/301 (74%), Gaps = 6/301 (1%)

pfam04865, Baseplate J-like protein. 
CD-Length = 247 residues, 100.0% aligned
Score =  313 bits (803), Expect = 2e-86
Identities = 164/252 (65%), Positives = 189/252 (75%), Gaps = 5/252 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14661




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22617




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38081




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2735_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2735
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4468
                           PA0618_tr
                           translation of PA0618
                           295
                           99.99
                           99.99
                           0
                           1458.0
     

     
     
129333
                           gb|AAG04007.1|AE004498_2
                           (AE004498) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
                           295
                           99.66
                           99.99
                           0
                           1455.0
     

     
     
129334
                           dbj|BAA83156.1|
                           (AB030825) PRF13~similar to J genes of P2 and phiCTX: baseplate or base of tail fiber [Pseudomonas aeruginosa]
                           295
                           99.66
                           99.99
                           0
                           1455.0
     

     
     
129335
                           dbj|BAB03226.1|
                           (AB046380) baseplate/ tail fiber protein [Pseudomonas aeruginosa]
                           295
                           78.64
                           78.64
                           63
                           1146.0
     

     
     
129338
                           gb|AAN79438.1|AE016758_42
                           (AE016758) Phage baseplate assembly protein [Escherichia coli CFT073]
                           304
                           60.19
                           75.65
                           11
                           878.0
     

     






      

          
GC ORFID: 45737How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0618Glimmer Score: 

          
Start: 6491439Stop: 6492326

          
Length: 888


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0618 translation of PA0618Homolog Bit Score 566.0

          
Other Homologs:  t_PA0618 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATCATCGATCTTTCCCAGTTGCCGGAGCCAGAGGTTATCGAAAACCTCGATTTCGAGACGATTTACCAA 
GAGCTGTTGGGCGACTTCCGCGAAGCCATGGCTGGCGAATGGACAGCGGAGGTGGAGTCGGATCCGGTTCTC 
AAGCTTCTGCAACTGGCGGCCTATCGAGAACTGCTGCTGCGGGCGCGGATCAACGATGCGGCGCGGGCGGTG 
ATGCTGGCATACGCCAGCGGTGCCGATCTCGACCAGATCGGTGCCGGCTTCAATGTGCAGCGTTTGCTGATC 
AGGCCCGCTCAGCCCGAGGCGGTACCGCCGGTGGAGGCGCAGTACGAGAGCGACAAGTCGCTGCGCAATCGC 
ATCCAGCTCGCGTTCGAGCAGCTATCCGTCGCAGGACCGCGGAACGCCTATATAGCCCATGCGCTGGGCGCG 
GATGGAAGGGTGGCGGATGCCTCTGCGACCAGTCCGGCGCCCTGCGAAGTGCTGATCAGCGTGCTCGGGGTG 
GAAGGCAACGGGCAGGCACCGGAAGCGGTGTTGCAGGCAGTGCGCCTGGCGCTGAACGCGGAGGACGTGCGT 
CCTGTCGCGGATCGGGTAACGGTGCGCTCGGCAGGAATCGTTCCCTATCAGGTCAAGGCGCAGCTCTACCTG 
TTTCCCGGCCCCGAGGCCGAGCTGATCCGTGCCGCCGCCGAGGCTTCGCTGCGCGACTACATTTCCGCCCAG 
CGCCGCCTGGGCCGCGACATCCGGCGTTCGGCCCTGTTCGCCACCCTGCATGTCGAAGGCGTGCAGCGCGTC 
GAACTGCAGGAGCCTGCGGCCGACGTGGTCCTGGATGAAACCCAGGCGGCCTATTGCACGGGGTACGCGATC 
ACCTTGGGAGGCGTCGATGAGTAG