ViewGene
Locus Name:
GeneID:
Location:

GeneID:2698
TrivialName: PA14_73310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73310
PAO1 Ortholog Locus:PA5560
Sequence Length:870
Protein Length:289
Start: 6527667
Stop: 6526798
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08945.1|AE004967_16 (AE004967) ATP synthase A chain [Pseudomonas aeruginosa PAO1]
Identities = 289/289 (100%), Positives = 289/289 (100%)
Sequence:
ATGGCAGCAGAAACCGCTTCGGGTTACATCCAGCACCACTTGCAGAACCTGACCTTCGGGCGTCTGCCTAAT
GGTGATTGGGGGTTCGCCCACACCGCCGAGCAAGCCAAGGAAATGGGCTTCTGGGCATTCCACGTAGACACC
CTGGGCTGGTCGGTACTGCTCGGCGTGGTGTTCCTGTTCATCTTCCGCCTGGCAGCCAAGAAGGCCACCAGC
GGCCAGCCGGGTGGACTGCAGAACTTCGTCGAGGTGATGGTCGAGTTCGTCGACACCAGCGTCAAGGACACC
TTCCACGGGCGCAACCCGTTGATCGCGCCCCTGGCCCTGACCGTGTTCGTCTGGATCTTCCTGCTCAACCTG
ATCGACCTGGTTCCGGTGGACTACCTGCCGATGCTGGCCGCGAAGATCACCGGCGACGAGCACCTGTTCTTC
CGCGCGGTGGCCACCACCGACCCGAACGCCACCCTCGGCCTGTCGATCTCGGTGTTCGCCCTGATCGTCTTC
TACAGCATCAAGGTCAAGGGCATCGGCGGCTTCCTCGGTGAACTGACCCTGCACCCCTTCAGCAGCAAGAAC
ATCGTCGTTCAGATCCTGCTGATTCCGGTGAACTTCCTGCTCGAGTTCGTGACCCTGATCGCCAAGCCGGTT
TCGCTGGCGCTGCGTCTGTTCGGCAACATGTATGCCGGCGAACTGATCTTCATTCTGATCGCCGTCATGTTC
GGTAGCGGAATGTTCCTGCTGAGTGCCCTGGGCGTAGCCCTGAACTGGGCGTGGGCTGTGTTCCACATCCTG
ATCATCACCCTGCAGGCCTTCATCTTCATGATGCTGACCATCGTCTACCTGTCGATGGCGCACGAAGACAAC
CATTAA
Translation:
MAAETASGYIQHHLQNLTFGRLPNGDWGFAHTAEQAKEMGFWAFHVDTLGWSVLLGVVFLFIFRLAAKKATS
GQPGGLQNFVEVMVEFVDTSVKDTFHGRNPLIAPLALTVFVWIFLLNLIDLVPVDYLPMLAAKITGDEHLFF
RAVATTDPNATLGLSISVFALIVFYSIKVKGIGGFLGELTLHPFSSKNIVVQILLIPVNFLLEFVTLIAKPV
SLALRLFGNMYAGELIFILIAVMFGSGMFLLSALGVALNWAWAVFHILIITLQAFIFMMLTIVYLSMAHEDN
H*
AnnotationID:2706GeneID:2698
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 08:08:42
Gene Name:atpB
Confidence Code:2
GeneProduct:ATP synthase A chain
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:ATP synthase F0, A subunit
Functional Category Confidence Code:5
COGs:COG0356,pfam00119
Secondary Functional Category(ies):
EC Number:3.6.1.34
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO59018.1| (AE016876) ATP synthase F0, A subunit [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 289

 Score =  501 bits (1290), Expect = e-141
 Identities = 240/289 (83%), Positives = 267/289 (92%)

>gb|AAN70983.1|AE016743_1 (AE016794) ATP synthase F0, A subunit [Pseudomonas putida KT2440]
          Length = 289

 Score =  493 bits (1269), Expect = e-139
 Identities = 235/289 (81%), Positives = 267/289 (92%)

>gb|AAN57712.1|AE015907_10 (AE015907) ATP synthase F0, A subunit [Shewanella oneidensis MR-1]
          Length = 264

 Score =  327 bits (837), Expect = 7e-89
 Identities = 173/286 (60%), Positives = 214/286 (74%), Gaps = 28/286 (9%)








 
Structural Features:
COG0356, AtpB, F0F1-type ATP synthase, subunit a [Energy production and conversion]
CD-Length = 246 residues,  90.7% aligned
Score =  187 bits (477), Expect = 1e-48
Identities = 113/249 (45%), Positives = 145/249 (58%), Gaps = 26/249 (10%)

pfam00119, ATP-synt_A, ATP synthase A chain
CD-Length = 163 residues, 100.0% aligned
Score = 91.0 bits (226), Expect = 2e-19
Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 34/190 (17%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5399




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22544




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33343




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2698_cdd.html


    		




 
URL:

















    ReferenceID:35553




  
Author/Investigator(s):
        Clark MA, Baumann L, Baumann P.





  
Title:
        Sequence analysis of a 34.7-kb DNA segment from the genome of Buchnera aphidicola (endosymbiont of aphids) containing groEL, dnaA, the atp operon, gidA, and rho.




  
PubMed:
        9516544


MedLine:
        




    
Source:
Curr Microbiol. 1998 Mar;36(3):158-63.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9516544

















    ReferenceID:35568




  
Author/Investigator(s):
        Curtis SE.





  
Title:
        Genes encoding the beta and epsilon subunits of the proton-translocating ATPase from Anabaena sp. strain PCC 7120.




  
PubMed:
        2878921


MedLine:
        




    
Source:
J Bacteriol. 1987 Jan;169(1):80-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2878921

















    ReferenceID:35571




  
Author/Investigator(s):
        Woessner JP, Gillham NW, Boynton JE.





  
Title:
        The sequence of the chloroplast atpB gene and its flanking regions in Chlamydomonas reinhardtii.




  
PubMed:
        2876928


MedLine:
        




    
Source:
Gene. 1986;44(1):17-28.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2876928

















    ReferenceID:35572




  
Author/Investigator(s):
        Nielsen J, Hansen FG, Hoppe J, Friedl P, von Meyenburg K.





  
Title:
         The nucleotide sequence of the atp genes coding for the F0 subunits a, b, c and the F1 subunit delta of the membrane bound ATP synthase of Escherichia coli.




  
PubMed:
        6278247


MedLine:
        




    
Source:
Mol Gen Genet. 1981;184(1):33-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6278247

















    ReferenceID:35585




  
Author/Investigator(s):
        Inatomi K, Eya S, Maeda M, Futai M.





  
Title:
        Amino acid sequence of the alpha and beta subunits of Methanosarcina barkeri ATPase deduced from cloned genes. Similarity to subunits of eukaryotic vacuolar and F0F1-ATPases.




  
PubMed:
        2544575


MedLine:
        




    
Source:
J Biol Chem. 1989 Jul 5;264(19):10954-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2544575









           
Homologs By Global Alignment 

           

       



     
Gene ID:2698
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4422
                           PA5560_tr
                           translation of PA5560
                           289
                           99.99
                           99.99
                           0
                           1478.0
     

     
     
128516
                           gb|AAG08945.1|AE004967_16
                           (AE004967) ATP synthase A chain [Pseudomonas aeruginosa PAO1]
                           289
                           99.99
                           99.99
                           0
                           1478.0
     

     
     
128517
                           gb|AAO59018.1|
                           (AE016876) ATP synthase F0, A subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           289
                           83.04
                           92.38
                           0
                           1290.0
     

     
     
128518
                           gb|AAN70983.1|AE016743_1
                           (AE016794) ATP synthase F0, A subunit [Pseudomonas putida KT2440]
                           289
                           81.31
                           92.38
                           0
                           1269.0
     

     
     
128519
                           gb|AAN57712.1|AE015907_10
                           (AE015907) ATP synthase F0, A subunit [Shewanella oneidensis MR-1]
                           293
                           60.06
                           74.06
                           33
                           858.0
     

     






      

          
GC ORFID: 45700How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5560Glimmer Score: 

          
Start: 5791356Stop: 5790487

          
Length: 870


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5560 translation of PA5560Homolog Bit Score 573.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4126 (ORF: BLASTX 498.0), t_PA5560 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAGCAGAAACCGCTTCGGGTTACATCCAGCACCACTTGCAGAACCTGACCTTCGGGCGTCTGCCTAAT 
GGTGATTGGGGGTTCGCCCACACCGCCGAGCAAGCCAAGGAAATGGGCTTCTGGGCATTCCACGTAGACACC 
CTGGGCTGGTCGGTACTGCTCGGCGTGGTGTTCCTGTTCATCTTCCGCCTGGCAGCCAAGAAGGCCACCAGC 
GGCCAGCCGGGTGGACTGCAGAACTTCGTCGAGGTGATGGTCGAGTTCGTCGACACCAGCGTCAAGGACACC 
TTCCACGGGCGCAACCCGTTGATCGCGCCCCTGGCCCTGACCGTGTTCGTCTGGATCTTCCTGCTCAACCTG 
ATCGACCTGGTTCCGGTGGACTACCTGCCGATGCTGGCCGCGAAGATCACCGGCGACGAGCACCTGTTCTTC 
CGCGCGGTGGCCACCACCGACCCGAACGCCACCCTCGGCCTGTCGATCTCGGTGTTCGCCCTGATCGTCTTC 
TACAGCATCAAGGTCAAGGGCATCGGCGGCTTCCTCGGTGAACTGACCCTGCACCCCTTCAGCAGCAAGAAC 
ATCGTCGTTCAGATCCTGCTGATTCCGGTGAACTTCCTGCTCGAGTTCGTGACCCTGATCGCCAAGCCGGTT 
TCGCTGGCGCTGCGTCTGTTCGGCAACATGTATGCCGGCGAACTGATCTTCATTCTGATCGCCGTCATGTTC 
GGTAGCGGAATGTTCCTGCTGAGTGCCCTGGGCGTAGCCCTGAACTGGGCGTGGGCTGTGTTCCACATCCTG 
ATCATCACCCTGCAGGCCTTCATCTTCATGATGCTGACCATCGTCTACCTGTCGATGGCGCACGAAGACAAC 
CATTAA