ViewGene
Locus Name:
GeneID:
Location:

GeneID:2674
TrivialName: PA14_54350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54350
PAO1 Ortholog Locus:PA0768
Sequence Length:855
Protein Length:284
Start: 4820626
Stop: 4819772
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04157.1|AE004511_10 (AE004511) signal peptidase I [Pseudomonas aeruginosa PAO1]
Identities = 284/284 (100%), Positives = 284/284 (100%)
Sequence:
ATGACACTCAATTTCCCGTTGTTGCTGGTCATCGCCGTGGCTGTATGCGGCGCCCTGGCCCTGGTCGACCTG
GTGCTGTTCGCGCCGCGTCGGCGGGCCGCGATCTCTTCCTACGAAGGGCAGGTGAACGAGCCCGATCCGGCA
GTGCTGGAGAAGCTCAACAAGGAACCGCTGCTGGTGGAGTACGGCAAGTCGTTCTTCCCGGTGCTGTTCATC
GTGCTGGTGCTGCGTTCCTTCCTGGTCGAACCGTTCCAGATTCCCTCGGGGTCGATGAAACCTACCCTCGAG
GTCGGCGATTTCATCCTGGTCAACAAGTTCGCCTACGGTATCCGCCTGCCGGTGCTGGACACCAAGGTGATC
CCGATCGGCGACCCGCAGCGCGGCGATGTCATGGTGTTCCGCTATCCCAGCGAACCGAACATCAACTACATC
AAGCGCGTGGTCGGCCTGCCCGGCGACACCGTGCGCTATACCAAGGAAAAGCGCCTGTACGTCAACGGTGAG
CTGGTAGCGGAGAAGCTGGTCGGCGAGGAACCGGGCACCCTGGGCAGCGTGACCCTGTACCAGGAGAAGCTG
GGCCAGGCCGAGCACCTGATCCGCAAGGAAATGAGCCGCTATCGCATCGAGCCCGACCGCCAGTGGACCATT
CCCGCCGGCCACTACTTCATGATGGGCGACAACCGCGACAACTCCAACGACAGCCGCTACTGGAACGATCCG
AAGATCCCCAAGGATCTGCTGGGCATGGTTCCGGACCGCAATATCGTCGGCAAGGCCTTCGCCGTGTGGATG
AGCTGGCCCGATCCGAAGATGAGCAACCTGCCGAACTTCTCCCGGGTCGGCGTGATTCACTGA
Translation:
MTLNFPLLLVIAVAVCGALALVDLVLFAPRRRAAISSYEGQVNEPDPAVLEKLNKEPLLVEYGKSFFPVLFI
VLVLRSFLVEPFQIPSGSMKPTLEVGDFILVNKFAYGIRLPVLDTKVIPIGDPQRGDVMVFRYPSEPNINYI
KRVVGLPGDTVRYTKEKRLYVNGELVAEKLVGEEPGTLGSVTLYQEKLGQAEHLIRKEMSRYRIEPDRQWTI
PAGHYFMMGDNRDNSNDSRYWNDPKIPKDLLGMVPDRNIVGKAFAVWMSWPDPKMSNLPNFSRVGVIH*
AnnotationID:2682GeneID:2674
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 17:05:34
Gene Name:lepB 
Confidence Code:2
GeneProduct:signal peptidase I
Cell Localization:(4) Inner membrane protein
Synonyms:PA0768, lep, SPASE I 
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:leader peptidase 1 
Functional Category Confidence Code:5
COGs:pfam00461, KOG0171
Secondary Functional Category(ies):Translation, post-translational modification, degradation.
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00461, Peptidase_S26, Signal peptidase I.  Score: 160, 3e-40
KOG0171, Mitochondrial inner membrane protease, subun...  Score: 78.9, 1e-15
COG0681, LepB, Signal peptidase I.  Score: 65.8, 1e-11






   
Genomic Context:
The gene sequence lepA-lepB-rnc-era-recO-pdxJ is found in both E. coli and P. aeruginosa. 
In E. coli, lepA and lepB are cotranscribed.






   
Comment:


















    ReferenceID:5351




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22496




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2674
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4392
                           PA0768_tr
                           translation of PA0768
                           284
                           99.99
                           99.99
                           0
                           1484.0
     

     
     
128066
                           gb|AAG04157.1|AE004511_10
                           (AE004511) signal peptidase I [Pseudomonas aeruginosa PAO1]
                           284
                           99.99
                           99.99
                           0
                           1484.0
     

     
     
128067
                           emb|CAA39839.1|
                           (X56466) leader peptidase 1 [Pseudomonas fluorescens]
                           284
                           83.09
                           91.54
                           0
                           1274.0
     

     
     
128068
                           gb|AAN67054.1|AE016334_3
                           (AE016779) signal peptidase I [Pseudomonas putida KT2440]
                           284
                           81.69
                           92.95
                           0
                           1269.0
     

     
     
128069
                           gb|AAO57675.1|
                           (AE016871) signal peptidase I [Pseudomonas syringae pv. tomato str. DC3000]
                           284
                           80.28
                           90.84
                           0
                           1245.0
     

     






      

          
GC ORFID: 45676How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0768Glimmer Score: 

          
Start: 133281Stop: 134135

          
Length: 855


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0768 translation of PA0768Homolog Bit Score 576.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6217 (ORF: BLASTX 489.0), t_PA1303 (ORF: BLASTX 124.0), t_PA0768 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACACTCAATTTCCCGTTGTTGCTGGTCATCGCCGTGGCTGTATGCGGCGCCCTGGCCCTGGTCGACCTG 
GTGCTGTTCGCGCCGCGTCGGCGGGCCGCGATCTCTTCCTACGAAGGGCAGGTGAACGAGCCCGATCCGGCA 
GTGCTGGAGAAGCTCAACAAGGAACCGCTGCTGGTGGAGTACGGCAAGTCGTTCTTCCCGGTGCTGTTCATC 
GTGCTGGTGCTGCGTTCCTTCCTGGTCGAACCGTTCCAGATTCCCTCGGGGTCGATGAAACCTACCCTCGAG 
GTCGGCGATTTCATCCTGGTCAACAAGTTCGCCTACGGTATCCGCCTGCCGGTGCTGGACACCAAGGTGATC 
CCGATCGGCGACCCGCAGCGCGGCGATGTCATGGTGTTCCGCTATCCCAGCGAACCGAACATCAACTACATC 
AAGCGCGTGGTCGGCCTGCCCGGCGACACCGTGCGCTATACCAAGGAAAAGCGCCTGTACGTCAACGGTGAG 
CTGGTAGCGGAGAAGCTGGTCGGCGAGGAACCGGGCACCCTGGGCAGCGTGACCCTGTACCAGGAGAAGCTG 
GGCCAGGCCGAGCACCTGATCCGCAAGGAAATGAGCCGCTATCGCATCGAGCCCGACCGCCAGTGGACCATT 
CCCGCCGGCCACTACTTCATGATGGGCGACAACCGCGACAACTCCAACGACAGCCGCTACTGGAACGATCCG 
AAGATCCCCAAGGATCTGCTGGGCATGGTTCCGGACCGCAATATCGTCGGCAAGGCCTTCGCCGTGTGGATG 
AGCTGGCCCGATCCGAAGATGAGCAACCTGCCGAACTTCTCCCGGGTCGGCGTGATTCACTGA