ViewGene
Locus Name:
GeneID:
Location:

GeneID:2634
TrivialName: PA14_32880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32880
PAO1 Ortholog Locus:PA2454
Sequence Length:852
Protein Length:283
Start: 2877917
Stop: 2877066
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05842.1|AE004673_2 (AE004673) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 282/283 (99%), Positives = 282/283 (99%)
Sequence:
ATGCGATCCGACCTGCACGAGGCCAACCGGCTGTCGTGGAACGCCGCCACCCGGGCGCACAACAGCCACAAG
GCCGACCAGGCCGCCTTCTTCCGCAACGGCGGTTCCACGCTCTATCCCGAGGAACTGCAACTGCTCGGCCAT
CTCGACGGCCTGCGCCTGCTGCATCTGCAATGCAACGCCGGACAGGACAGCCTGAGCCTGGCGCGCCTTGGC
GCCCGCGTCACCGGGGTCGACATCGCCGACAGCGCCATCGACTTCGCCCGCCAGCTGTCCCGCGACAGCGGC
ATCGCCGCCGACTTCCAGCGCGACGACATCCTCCGCTGGCTGCCCGTCGCCGCCACCCGCGGCGAACGCTTC
GAACGGGTCTTCGCCTCCTACGGCACGCTGGTCTGGCTCTCCGACCTCAAGCGCTGGGCCGACGGCATCGCC
CAGGTACTGGTTCCCGGCGGGCGCTTCGTCCTGGTGGAGTTCCACCCTTTCGCCCTGTACTTCGACCCACAC
TGGCAACCGGCCTACGACTACTTCAGCCGCGAGCCGATCGCCGAGAGCGGCGTCAGCGACTATGTCGCCGAG
TCCGGCGCCAGCCTGGCGCCCTCCGGCTACCGCGCCGGCGTCGAGAACTTCAGCAACCCTCATCCCAGCTAC
GAGTTCCAGTGGGGCCTGGCCGATGTGATCGGCGCCCTGCTCGGCGCCGGCCTGCAACTCGAACGGCTGGAG
GAATACCCCTACGCCAACGGCTGGGCCGGCTTCGACGGCATGCGCGACGGCGGCGGCGGACGCATGCTGCCG
CCCGCCGATCGTCCGCGCCTGCCGCTGATGTACGGCCTTAGCGCAAGGAAACCACGATGA
Translation:
MRSDLHEANRLSWNAATRAHNSHKADQAAFFRNGGSTLYPEELQLLGHLDGLRLLHLQCNAGQDSLSLARLG
ARVTGVDIADSAIDFARQLSRDSGIAADFQRDDILRWLPVAATRGERFERVFASYGTLVWLSDLKRWADGIA
QVLVPGGRFVLVEFHPFALYFDPHWQPAYDYFSREPIAESGVSDYVAESGASLAPSGYRAGVENFSNPHPSY
EFQWGLADVIGALLGAGLQLERLEEYPYANGWAGFDGMRDGGGGRMLPPADRPRLPLMYGLSARKPR*
AnnotationID:2642GeneID:2634
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:33
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2454
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5271




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22416




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2634
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4350
                           PA2454_tr
                           translation of PA2454
                           283
                           99.64
                           99.64
                           0
                           1498.0
     

     
     
127288
                           gb|AAG05842.1|AE004673_2
                           (AE004673) hypothetical protein PA2454 [Pseudomonas aeruginosa PAO1]
                           283
                           99.64
                           99.64
                           0
                           1498.0
     

     






      

          
GC ORFID: 45636How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2454Glimmer Score: 

          
Start: 2076007Stop: 2076858

          
Length: 852


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2454 translation of PA2454Homolog Bit Score 581.0

          
Other Homologs:  t_PA2454 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGATCCGACCTGCACGAGGCCAACCGGCTGTCGTGGAACGCCGCCACCCGGGCGCACAACAGCCACAAG 
GCCGACCAGGCCGCCTTCTTCCGCAACGGCGGTTCCACGCTCTATCCCGAGGAACTGCAACTGCTCGGCCAT 
CTCGACGGCCTGCGCCTGCTGCATCTGCAATGCAACGCCGGACAGGACAGCCTGAGCCTGGCGCGCCTTGGC 
GCCCGCGTCACCGGGGTCGACATCGCCGACAGCGCCATCGACTTCGCCCGCCAGCTGTCCCGCGACAGCGGC 
ATCGCCGCCGACTTCCAGCGCGACGACATCCTCCGCTGGCTGCCCGTCGCCGCCACCCGCGGCGAACGCTTC 
GAACGGGTCTTCGCCTCCTACGGCACGCTGGTCTGGCTCTCCGACCTCAAGCGCTGGGCCGACGGCATCGCC 
CAGGTACTGGTTCCCGGCGGGCGCTTCGTCCTGGTGGAGTTCCACCCTTTCGCCCTGTACTTCGACCCACAC 
TGGCAACCGGCCTACGACTACTTCAGCCGCGAGCCGATCGCCGAGAGCGGCGTCAGCGACTATGTCGCCGAG 
TCCGGCGCCAGCCTGGCGCCCTCCGGCTACCGCGCCGGCGTCGAGAACTTCAGCAACCCTCATCCCAGCTAC 
GAGTTCCAGTGGGGCCTGGCCGATGTGATCGGCGCCCTGCTCGGCGCCGGCCTGCAACTCGAACGGCTGGAG 
GAATACCCCTACGCCAACGGCTGGGCCGGCTTCGACGGCATGCGCGACGGCGGCGGCGGACGCATGCTGCCG 
CCCGCCGATCGTCCGCGCCTGCCGCTGATGTACGGCCTTAGCGCAAGGAAACCACGATGA