ViewGene
Locus Name:
GeneID:
Location:

GeneID:2612
TrivialName: PA14_26730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26730
PAO1 Ortholog Locus:PA2887
Sequence Length:879
Protein Length:292
Start: 2329648
Stop: 2328770
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06275.1|AE004715_1 (AE004715) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 292/292 (100%), Positives = 292/292 (100%)
Sequence:
ATGAGCTACGACTCGATCTTCCGACCTGGCCTGTTCGACGGCCAGACCATCATCGTCACCGGCGGCGGCAGT
GGCATCGGCCGCTGCACCGCCCATGAGCTGGCGGCCCTCGGCGCCCACGTGGTGCTGGTCGGACGCAAGGCG
GAAAAGCTGGAGAAGACCGCCGGCGAGATCGTCGAGGACGGCGGCAGCGTCAGCTGGCACGCCTGCGACATC
CGCGAGGAGGAAGCGGTGAAGACGCTGGTGGCGAATATCCTGGCCGAACGCGGGACCATCCATCACCTGGTC
AACAACGCCGGCGGCCAGTATCCCTCGCCCCTCGCCTCGATCAGCCAGAAGGGCTTCGAGACCGTGCTCCGC
ACCAACCTGGTCGGCGGCTTCCTGGTCGCCCGCGAAGTGTTCAACCAGTCGATGAGCAAGACCGGCGGCAGC
ATCGTCAACATGCTCGCCGACATGTGGGGCGGCATGCCCGGCATGGGTCACTCCGGCGCCGCACGCTCCGGC
ATGGAGAATTTCACCAGGACCGCCGCCGTCGAGTGGGGCCATGCCGGCGTGCGGGTCAACGCGGTGGCGCCG
GGCTGGATCGCGTCCAGCGGCATGGATACCTACGAAGGCGCGTTCAAGGCGGTGATCCCGACCCTGCGCGAG
CACGTGCCGCTCAAGCGCATCGGCAGCGAGTCGGAAGTCGCCGCCGCCATCGTCTTCCTGCTCTCCCCCGGC
GCCGCCTTCGTCAGCGGCAACACGATCCGCATCGACGGCGCCGCCAGCCAGGGCAGCCGCGCCTTCCCGCTA
TTCAAGGGCAAGCCGGGACAGAGCCGCGCGTACAACGGCTTCCACCGCGCCTACCTGCCCGACGTGCTGAAG
GACCAGGAGGACTGA
Translation:
MSYDSIFRPGLFDGQTIIVTGGGSGIGRCTAHELAALGAHVVLVGRKAEKLEKTAGEIVEDGGSVSWHACDI
REEEAVKTLVANILAERGTIHHLVNNAGGQYPSPLASISQKGFETVLRTNLVGGFLVAREVFNQSMSKTGGS
IVNMLADMWGGMPGMGHSGAARSGMENFTRTAAVEWGHAGVRVNAVAPGWIASSGMDTYEGAFKAVIPTLRE
HVPLKRIGSESEVAAAIVFLLSPGAAFVSGNTIRIDGAASQGSRAFPLFKGKPGQSRAYNGFHRAYLPDVLK
DQED*
AnnotationID:2620GeneID:2612
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 11:11:29
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain dehydrogenase
Cell Localization:()
Synonyms:PA2887
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00106,COG1028
Secondary Functional Category(ies):Secondary metabolites biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00106, adh_short, short chain dehydrogenase.
CD-Length = 247 residues,  99.6% aligned
Score =  160 bits (406), Expect = 2e-40
Identities = 90/247 (36%), Positives = 133/247 (53%), Gaps = 10/247 (4%)

COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  98.0% aligned
Score =  158 bits (400), Expect = 8e-40
Identities = 92/249 (36%), Positives = 134/249 (53%), Gaps = 10/249 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5227




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22372




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36167




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2612_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2612
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4321
                           PA2887_tr
                           translation of PA2887
                           292
                           99.99
                           99.99
                           0
                           1506.0
     

     
     
126821
                           gb|AAG06275.1|AE004715_1
                           (AE004715) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           292
                           99.99
                           99.99
                           0
                           1506.0
     

     
     
126822
                           gb|AAG19676.1|
                           (AE005055) 3-oxoacyl-[acyl-carrier-protein] reductase; FabG [Halobacterium sp. NRC-1]
                           298
                           34.56
                           46.64
                           49
                           412.0
     

     






      

          
GC ORFID: 45614How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2887Glimmer Score: 

          
Start: 2624278Stop: 2625156

          
Length: 879


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2887 translation of PA2887Homolog Bit Score 584.0

          
Other Homologs:  t_PA2887 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCTACGACTCGATCTTCCGACCTGGCCTGTTCGACGGCCAGACCATCATCGTCACCGGCGGCGGCAGT 
GGCATCGGCCGCTGCACCGCCCATGAGCTGGCGGCCCTCGGCGCCCACGTGGTGCTGGTCGGACGCAAGGCG 
GAAAAGCTGGAGAAGACCGCCGGCGAGATCGTCGAGGACGGCGGCAGCGTCAGCTGGCACGCCTGCGACATC 
CGCGAGGAGGAAGCGGTGAAGACGCTGGTGGCGAATATCCTGGCCGAACGCGGGACCATCCATCACCTGGTC 
AACAACGCCGGCGGCCAGTATCCCTCGCCCCTCGCCTCGATCAGCCAGAAGGGCTTCGAGACCGTGCTCCGC 
ACCAACCTGGTCGGCGGCTTCCTGGTCGCCCGCGAAGTGTTCAACCAGTCGATGAGCAAGACCGGCGGCAGC 
ATCGTCAACATGCTCGCCGACATGTGGGGCGGCATGCCCGGCATGGGTCACTCCGGCGCCGCACGCTCCGGC 
ATGGAGAATTTCACCAGGACCGCCGCCGTCGAGTGGGGCCATGCCGGCGTGCGGGTCAACGCGGTGGCGCCG 
GGCTGGATCGCGTCCAGCGGCATGGATACCTACGAAGGCGCGTTCAAGGCGGTGATCCCGACCCTGCGCGAG 
CACGTGCCGCTCAAGCGCATCGGCAGCGAGTCGGAAGTCGCCGCCGCCATCGTCTTCCTGCTCTCCCCCGGC 
GCCGCCTTCGTCAGCGGCAACACGATCCGCATCGACGGCGCCGCCAGCCAGGGCAGCCGCGCCTTCCCGCTA 
TTCAAGGGCAAGCCGGGACAGAGCCGCGCGTACAACGGCTTCCACCGCGCCTACCTGCCCGACGTGCTGAAG 
GACCAGGAGGACTGA