ViewGene
Locus Name:
GeneID:
Location:

GeneID:2605
TrivialName: PA14_10320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10320
PAO1 Ortholog Locus:PA4145
Sequence Length:891
Protein Length:296
Start: 890047
Stop: 889157
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07532.1|AE004831_4 (AE004831) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 295/296 (99%), Positives = 295/296 (99%)
Sequence:
ATGATCGACGACATCCGCTACCTGATCGTATTCGCCAAGATCGCCGAGACCGGCTCCGTCTCCGGCGGCGCC
GAGGCGCTGGGCCTGAGCGCCGCGACCGCCAGCCTGCACCTGTCCAGGCTGGAACGGAACCTGGGCCGTGCG
CTGCTCTACCGCAACAGCCGCAAGCTGTCGCTGACCCAGGACGGCACGCAGTTGCTGGACACCGCCCGCTCC
ATGCTGGAACTCTACGAGAAGGGCTTCATCGAGTTCCGCCAGCGCGCCGTCTCGACCCGCAACAGCCTGCGC
ATCTCGATGCCCGCGGTGTTCGTCAACGGCGACTTCACCCGTCACCTGGCAGCCTTCATCGAGGAGCATCCC
GACCTCGACCTCGGCATCGCCTGCGACGACAGCCGCCACGACATCATCGGCGACGGCATCGACATCGCCTTC
CGCATCGGCGACCTGCCGGACAGCTCGCTGAAGGCCCGTCACCTGTTCCTGCTGCCGCGCCAGGTAGTGGCG
GCGCCGGCATTCCTGGCCCGGCACGCGCCGCTGGAACACCCGCGCGACCTGCAGCGGCTGGAATGGATCGGG
CTCGGCATGCGCCCCGACAGCCGGCTATTCCGTCATGCGCGGGACGACGAGGAGGTACGCGTCGACTACACC
CCGCGGGTGCGCGTCGACAGCGTCGAAGCCTCCTGCCGCCTGGCCCGCCTCGGCGTCGGCCTGGCCGCGCCG
CCGACCTACCTGAGCGACGAGCCGATCCGTCGCGGCGAGTTGCGCGCGGTGCTGCCGGAATGGCGCCTGGAG
CCGTTGAAGGTGTATGCGGTGTGGCCGCCCAACGTACCCGCCAGCAGCATCGCCTATACCCTCATCAATCAC
CTCTACGAGGCCTTCAATCCGGGCTAG
Translation:
MIDDIRYLIVFAKIAETGSVSGGAEALGLSAATASLHLSRLERNLGRALLYRNSRKLSLTQDGTQLLDTARS
MLELYEKGFIEFRQRAVSTRNSLRISMPAVFVNGDFTRHLAAFIEEHPDLDLGIACDDSRHDIIGDGIDIAF
RIGDLPDSSLKARHLFLLPRQVVAAPAFLARHAPLEHPRDLQRLEWIGLGMRPDSRLFRHARDDEEVRVDYT
PRVRVDSVEASCRLARLGVGLAAPPTYLSDEPIRRGELRAVLPEWRLEPLKVYAVWPPNVPASSIAYTLINH
LYEAFNPG*
AnnotationID:2613GeneID:2605
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 15:03:56
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4145
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription] 
CD-Length = 297 residues,  97.6% aligned
Score =  117 bits (292), Expect = 2e-27
Identities = 86/297 (28%), Positives = 129/297 (43%), Gaps = 12/297 (4%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues,  97.6% aligned
Score = 91.6 bits (227), Expect = 1e-19
Identities = 61/207 (29%), Positives = 85/207 (41%), Gaps = 8/207 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5213




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22358




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36879




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2605_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2605
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4314
                           PA4145_tr
                           translation of PA4145
                           296
                           99.66
                           99.66
                           0
                           1509.0
     

     
     
126748
                           gb|AAG07532.1|AE004831_4
                           (AE004831) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           296
                           99.66
                           99.66
                           0
                           1509.0
     

     
     
126749
                           gb|AAQ59067.1|
                           (AE016914) probable transcriptional regulator [Chromobacterium violaceum ATCC 12472]
                           302
                           44.37
                           59.93
                           13
                           595.0
     

     






      

          
GC ORFID: 45607How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4145Glimmer Score: 

          
Start: 4063890Stop: 4064780

          
Length: 891


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4145 translation of PA4145Homolog Bit Score 585.0

          
Other Homologs:  t_PA4145 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGACGACATCCGCTACCTGATCGTATTCGCCAAGATCGCCGAGACCGGCTCCGTCTCCGGCGGCGCC 
GAGGCGCTGGGCCTGAGCGCCGCGACCGCCAGCCTGCACCTGTCCAGGCTGGAACGGAACCTGGGCCGTGCG 
CTGCTCTACCGCAACAGCCGCAAGCTGTCGCTGACCCAGGACGGCACGCAGTTGCTGGACACCGCCCGCTCC 
ATGCTGGAACTCTACGAGAAGGGCTTCATCGAGTTCCGCCAGCGCGCCGTCTCGACCCGCAACAGCCTGCGC 
ATCTCGATGCCCGCGGTGTTCGTCAACGGCGACTTCACCCGTCACCTGGCAGCCTTCATCGAGGAGCATCCC 
GACCTCGACCTCGGCATCGCCTGCGACGACAGCCGCCACGACATCATCGGCGACGGCATCGACATCGCCTTC 
CGCATCGGCGACCTGCCGGACAGCTCGCTGAAGGCCCGTCACCTGTTCCTGCTGCCGCGCCAGGTAGTGGCG 
GCGCCGGCATTCCTGGCCCGGCACGCGCCGCTGGAACACCCGCGCGACCTGCAGCGGCTGGAATGGATCGGG 
CTCGGCATGCGCCCCGACAGCCGGCTATTCCGTCATGCGCGGGACGACGAGGAGGTACGCGTCGACTACACC 
CCGCGGGTGCGCGTCGACAGCGTCGAAGCCTCCTGCCGCCTGGCCCGCCTCGGCGTCGGCCTGGCCGCGCCG 
CCGACCTACCTGAGCGACGAGCCGATCCGTCGCGGCGAGTTGCGCGCGGTGCTGCCGGAATGGCGCCTGGAG 
CCGTTGAAGGTGTATGCGGTGTGGCCGCCCAACGTACCCGCCAGCAGCATCGCCTATACCCTCATCAATCAC 
CTCTACGAGGCCTTCAATCCGGGCTAG