ViewGene
Locus Name:
GeneID:
Location:

GeneID:2587
TrivialName: PA14_25810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25810
PAO1 Ortholog Locus:PA2956
Sequence Length:897
Protein Length:298
Start: 2252711
Stop: 2253607
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06344.1|AE004721_12 (AE004721) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 298/298 (100%), Positives = 298/298 (100%)
Sequence:
ATGAGTGTCCGTGAATTCCCCATCCACTACATCGAACCGGTGTTCCGGCCCCCGAGCGAGGCGCATTCGCTG
ATCCTCCCGGTGACCAATGGCTGTTCCTGGAACAAATGCGGCTTTTGCGAGATGTATACCCAGCCGCAAAAG
AAATTTCGCGCCCGCGACGAGAACGAGGTACTGGAGGAGATCCGCCGCTGCGGCGAGCGCCTGATCGTCAAG
CGGGTGTTTCTCGCCGATGGCGACGCCCTGGTATTGCCGACCCGCCGGCTGCTCGCGGTGCTGCAGGCGATT
CGCGAGCACTTGCCGGAGGTGGAGCGGGTATCCAGCTACTGCCTGCCGCGCAACCTGCGCAGGAAGTCGGTC
GACGAGTTGCGCGAACTGGCCGACGCCGGGCTGCGAATGGCCTATGTCGGCGCCGAGTCCGGCGACGACGAA
GTGCTGGCACGGGTCAACAAGGGCGAGACCTATTCCTCTACCCTGGATGCGCTGGAAAAGCTTGGCGAGGCG
GGGATCAGTCGTTCGGTGATGATCCTCAACGGTCTGGGCGGAATGACCCTGAGCGCGCAGCACGCGGACAAC
TCCGCGCGCCTGATGAACGCCGCCCAGCCGGAGTACCTGTCGACCCTGGTGGTGAGTTTCCCTACCGGCGAG
CAGCGTTTCCGTGCTGGCTTCGCCGATTTCGAGGCGCTGGATCGGCGTGCCCTGTTCGTCGAGGTCGAACGC
CTGTTGCAGGGATTGGAGCTCGAAGACACGGTATTTCGCAGCGACCACGCTTCCAACTATCTGGTGCTCAAG
GGCGAGCTGGGTGCCGACAAGGCGCGCCTGCTGGCCGAGGTCCGCCAGGCCATCGAGCAGCCGCAGCACGCT
GCCCTGCGCCAGGAGTGGCAGCGTGGCCTGTGA
Translation:
MSVREFPIHYIEPVFRPPSEAHSLILPVTNGCSWNKCGFCEMYTQPQKKFRARDENEVLEEIRRCGERLIVK
RVFLADGDALVLPTRRLLAVLQAIREHLPEVERVSSYCLPRNLRRKSVDELRELADAGLRMAYVGAESGDDE
VLARVNKGETYSSTLDALEKLGEAGISRSVMILNGLGGMTLSAQHADNSARLMNAAQPEYLSTLVVSFPTGE
QRFRAGFADFEALDRRALFVEVERLLQGLELEDTVFRSDHASNYLVLKGELGADKARLLAEVRQAIEQPQHA
ALRQEWQRGL*
AnnotationID:2595GeneID:2587
AnnotatorUID: diggins
Modification Date/Time: 2005-04-10 11:11:31
Gene Name:
Confidence Code:3
GeneProduct:putative oxidase
Cell Localization:()
Synonyms:PA2956
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00729,pfam04055
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAB89934.1| (AE001013) oxygen-independent coproporphyrinogen III oxidase,
           putative [Archaeoglobus fulgidus DSM 4304]
          Length = 287

 Score =  210 bits (535), Expect = 7e-54
 Identities = 124/293 (42%), Positives = 173/293 (59%), Gaps = 8/293 (2%)

>gb|AAK80377.1|AE007742_11 (AE007742) Oxygen-independent coproporphyrinogen III oxidase, Fe-S
           oxidoreductase [Clostridium acetobutylicum]
          Length = 290

 Score =  192 bits (487), Expect = 3e-48
 Identities = 103/273 (37%), Positives = 167/273 (61%), Gaps = 5/273 (1%)








 
Structural Features:
smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM
CD-Length = 219 residues,  84.9% aligned
Score =  105 bits (262), Expect = 9e-24
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 9/190 (4%)

pfam04055, Radical_SAM, Radical SAM superfamily.
CD-Length = 167 residues,  94.6% aligned
Score = 80.8 bits (198), Expect = 2e-16







   
Genomic Context:






   
Comment:


















    ReferenceID:5177




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22322




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36090




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2587_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2587
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4293
                           PA2956_tr
                           translation of PA2956
                           298
                           99.99
                           99.99
                           0
                           1514.0
     

     
     
126013
                           gb|AAG06344.1|AE004721_12
                           (AE004721) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           298
                           99.99
                           99.99
                           0
                           1514.0
     

     
     
126014
                           gb|AAN53609.1|AE015500_8
                           (AE015500) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           302
                           59.27
                           72.84
                           11
                           888.0
     

     
     
126015
                           gb|AAB89934.1|
                           (AE001013) oxygen-independent coproporphyrinogen III oxidase, putative [Archaeoglobus fulgidus DSM 4304]
                           300
                           41.33
                           57.66
                           15
                           548.0
     

     
     
126016
                           gb|AAR36451.1|
                           (AE017218) radical SAM domain protein [Geobacter sulfurreducens PCA]
                           311
                           41.15
                           51.12
                           31
                           503.0
     

     






      

          
GC ORFID: 45589How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2956Glimmer Score: 

          
Start: 2701214Stop: 2700318

          
Length: 897


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2956 translation of PA2956Homolog Bit Score 587.0

          
Other Homologs:  t_PA2956 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGTCCGTGAATTCCCCATCCACTACATCGAACCGGTGTTCCGGCCCCCGAGCGAGGCGCATTCGCTG 
ATCCTCCCGGTGACCAATGGCTGTTCCTGGAACAAATGCGGCTTTTGCGAGATGTATACCCAGCCGCAAAAG 
AAATTTCGCGCCCGCGACGAGAACGAGGTACTGGAGGAGATCCGCCGCTGCGGCGAGCGCCTGATCGTCAAG 
CGGGTGTTTCTCGCCGATGGCGACGCCCTGGTATTGCCGACCCGCCGGCTGCTCGCGGTGCTGCAGGCGATT 
CGCGAGCACTTGCCGGAGGTGGAGCGGGTATCCAGCTACTGCCTGCCGCGCAACCTGCGCAGGAAGTCGGTC 
GACGAGTTGCGCGAACTGGCCGACGCCGGGCTGCGAATGGCCTATGTCGGCGCCGAGTCCGGCGACGACGAA 
GTGCTGGCACGGGTCAACAAGGGCGAGACCTATTCCTCTACCCTGGATGCGCTGGAAAAGCTTGGCGAGGCG 
GGGATCAGTCGTTCGGTGATGATCCTCAACGGTCTGGGCGGAATGACCCTGAGCGCGCAGCACGCGGACAAC 
TCCGCGCGCCTGATGAACGCCGCCCAGCCGGAGTACCTGTCGACCCTGGTGGTGAGTTTCCCTACCGGCGAG 
CAGCGTTTCCGTGCTGGCTTCGCCGATTTCGAGGCGCTGGATCGGCGTGCCCTGTTCGTCGAGGTCGAACGC 
CTGTTGCAGGGATTGGAGCTCGAAGACACGGTATTTCGCAGCGACCACGCTTCCAACTATCTGGTGCTCAAG 
GGCGAGCTGGGTGCCGACAAGGCGCGCCTGCTGGCCGAGGTCCGCCAGGCCATCGAGCAGCCGCAGCACGCT 
GCCCTGCGCCAGGAGTGGCAGCGTGGCCTGTGA