ViewGene
Locus Name:
GeneID:
Location:

GeneID:2585
TrivialName: PA14_40810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40810
PAO1 Ortholog Locus:PA1834
Sequence Length:891
Protein Length:296
Start: 3642093
Stop: 3641203
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05223.1|AE004609_10 (AE004609) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 292/296 (98%), Positives = 294/296 (99%)
Sequence:
ATGGCCGATGTGGCGGGCGCCGATTTCCTCGGGAGCGATGCGCCAGGCGGTTTTCGGCGCTTCGCGGTAGAA
GCCCAGCAGCGACTCGATGCTGCGTCGGGACATCATTTCATCGTCGGTGAACGACAGCGACACGATGGGCGT
GCGTACGGCGGAGAAGGCGCGGCGGATAGCCTCGCCATCCGCGAGGGCGTACTGCGGATGCAGGCACCAGCG
TCGCCATTGTTCGATCACCCCGCGCGGCAGGTCGCCGACCATGCCCAGGCGGCGCCCGGGAAAATAGCCGAG
CAGCGGCGTCAGCAGGGGCGCGACGAGGTACCAGAACAACCAGACCTTGTTGCGCAACCGCGGGCTGTTTTC
CTTCCAGTAGCCACTGCCGCTGGCGATGCTGAAGACCCTCTCGATACGCTCGCGCCCTTCGACGAAGGGCAG
GATCTGGCCGCCCAGGCTATGGCCGATCCAGTACAGGGGCTTGCTCCCGCTCTCGGCGAGCGCGGCGGCGAG
CATGGCGCTGCAGTCATGACGGGCCCAACCCAGCACATCGACCTCGAGACCGCGCAGCGAGCCGTTGCGCGA
TTGCCCCATGCCCAGGTAGTCGAAGGTGATGGCCAGGTAGCCGCGCTCTGCCAGCCAGGCGGCGAAGGGCGC
GTAGAACCGCTGTTCCACTCCCATCGCCGGGACGATCAGGAGATAGCCGCGCGGCTCCCCGGCAGGCCGGTA
CCAATGGCTGGCCAGCGGATGGCCGTTGCCGTTATCGATGAGGCGTGGTTGCGGAGGGTTCATGCCGGTCTC
CGTGGTCTGTTCGCGGCTTCGAGAATAGGGCTGGCCGCCAGGGCGCCTCCAGCCGGCCGAAAGCACGGCCGG
GGCGCCCTGGCGGTCAGGCCTGGCTGA
Translation:
MADVAGADFLGSDAPGGFRRFAVEAQQRLDAASGHHFIVGERQRHDGRAYGGEGAADSLAIREGVLRMQAPA
SPLFDHPARQVADHAQAAPGKIAEQRRQQGRDEVPEQPDLVAQPRAVFLPVATAAGDAEDPLDTLAPFDEGQ
DLAAQAMADPVQGLAPALGERGGEHGAAVMTGPTQHIDLETAQRAVARLPHAQVVEGDGQVAALCQPGGEGR
VEPLFHSHRRDDQEIAARLPGRPVPMAGQRMAVAVIDEAWLRRVHAGLRGLFAASRIGLAARAPPAGRKHGR
GALAVRPG*
AnnotationID:2593GeneID:2585
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 21:09:15
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1834
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:5173




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22318




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2585
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4291
                           PA1834_tr
                           translation of PA1834
                           296
                           98.64
                           99.32
                           0
                           1512.0
     

     
     
125993
                           gb|AAG05223.1|AE004609_10
                           (AE004609) hypothetical protein PA1834 [Pseudomonas aeruginosa PAO1]
                           296
                           98.64
                           99.32
                           0
                           1512.0
     

     






      

          
GC ORFID: 45587How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1834Glimmer Score: 

          
Start: 1311817Stop: 1312707

          
Length: 891


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1834 translation of PA1834Homolog Bit Score 587.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCCGATGTGGCGGGCGCCGATTTCCTCGGGAGCGATGCGCCAGGCGGTTTTCGGCGCTTCGCGGTAGAA 
GCCCAGCAGCGACTCGATGCTGCGTCGGGACATCATTTCATCGTCGGTGAACGACAGCGACACGATGGGCGT 
GCGTACGGCGGAGAAGGCGCGGCGGATAGCCTCGCCATCCGCGAGGGCGTACTGCGGATGCAGGCACCAGCG 
TCGCCATTGTTCGATCACCCCGCGCGGCAGGTCGCCGACCATGCCCAGGCGGCGCCCGGGAAAATAGCCGAG 
CAGCGGCGTCAGCAGGGGCGCGACGAGGTACCAGAACAACCAGACCTTGTTGCGCAACCGCGGGCTGTTTTC 
CTTCCAGTAGCCACTGCCGCTGGCGATGCTGAAGACCCTCTCGATACGCTCGCGCCCTTCGACGAAGGGCAG 
GATCTGGCCGCCCAGGCTATGGCCGATCCAGTACAGGGGCTTGCTCCCGCTCTCGGCGAGCGCGGCGGCGAG 
CATGGCGCTGCAGTCATGACGGGCCCAACCCAGCACATCGACCTCGAGACCGCGCAGCGAGCCGTTGCGCGA 
TTGCCCCATGCCCAGGTAGTCGAAGGTGATGGCCAGGTAGCCGCGCTCTGCCAGCCAGGCGGCGAAGGGCGC 
GTAGAACCGCTGTTCCACTCCCATCGCCGGGACGATCAGGAGATAGCCGCGCGGCTCCCCGGCAGGCCGGTA 
CCAATGGCTGGCCAGCGGATGGCCGTTGCCGTTATCGATGAGGCGTGGTTGCGGAGGGTTCATGCCGGTCTC 
CGTGGTCTGTTCGCGGCTTCGAGAATAGGGCTGGCCGCCAGGGCGCCTCCAGCCGGCCGAAAGCACGGCCGG 
GGCGCCCTGGCGGTCAGGCCTGGCTGA