ViewGene
Locus Name:
GeneID:
Location:

GeneID:2582
TrivialName: PA14_70790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70790
PAO1 Ortholog Locus:PA5364
Sequence Length:903
Protein Length:300
Start: 6305187
Stop: 6304285
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08749.1|AE004948_5 (AE004948) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 300/300 (100%), Positives = 300/300 (100%)
Sequence:
ATGAGCAAAGTCAGCGCGCTAGTGGTGGATGACGCCCCCTTCATCCGAGATCTGATGAAGAAAGGGTTGCGC
GACAACTTCCCCGGCCTTCATATCGAGGAGGCCGTGAACGGCCGCAAGGCCCAGCAACTGCTCAGTCGGCAG
AACGTCGACCTGATCCTCTGCGACTGGGAGATGCCGGAGATGTCCGGCCTCGAACTGCTGACCTGGTGCCGT
GCCCAGGAAAACCTCAAGACTACCCCGTTCATCATGGTCACCAGTCGCGGCGACAAGGAGAACGTGGTCCAG
GCGATCCAGGCCGGGGTGTCGGACTACATCGGCAAGCCATTCTCCAATGACCAGCTGGTGGCCAAGATCAAG
AAGGCCCTGAGCCGCAGCGGCAAGCTGGAAGCCCTGGCGGCCCACGCGCCGCGCCGGGAGATCGCCAGCGGC
ATGGCCAACGATTCGCTGGCCGCTCTGACCGGCGGTCGCGCCGAGGTGATCAAGCCCGCCGCCAGTCCGGCA
AAACCGGCCCCCGCCCCGAAGCCGGCTTCGGCTCCCCAGGCCAGCGCGCGTCCCGCCGGCAGCGGCAACCCG
CTGGGCCAGGCGCAATTGCGCCTGCCGCAGAGCAGCATGCCCTGCGTGATCAAGGCGGTCAGCCTGAAGGAA
GCGCAACTGGTGGTGAAGCGCGCCGACCCGCTGCCGCAGGTGCTGGAAAGCGCGGTGCTGGACCTCGAGGAA
AACAGCGACGTGGCGCGCCTGAACGGCTACCTGCACGCCATCGCCGCGCTGGAGCCGAAGCCGGATAGCGAT
TGGCTGCTGCTGACCCTGCGTTTCGTCGACCGCGACCCGCAGAAGCTCGACTACCTGTCGCGCCTGATCGCC
CGCGGAAGTACCCAGAAGCACTACGTTCCCGGCGCCTGA
Translation:
MSKVSALVVDDAPFIRDLMKKGLRDNFPGLHIEEAVNGRKAQQLLSRQNVDLILCDWEMPEMSGLELLTWCR
AQENLKTTPFIMVTSRGDKENVVQAIQAGVSDYIGKPFSNDQLVAKIKKALSRSGKLEALAAHAPRREIASG
MANDSLAALTGGRAEVIKPAASPAKPAPAPKPASAPQASARPAGSGNPLGQAQLRLPQSSMPCVIKAVSLKE
AQLVVKRADPLPQVLESAVLDLEENSDVARLNGYLHAIAALEPKPDSDWLLLTLRFVDRDPQKLDYLSRLIA
RGSTQKHYVPGA*
AnnotationID:2590GeneID:2582
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 07:07:24
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA5364
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00156
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58901.1| (AE016876) response regulator [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 297

 Score =  397 bits (1021), Expect = e-110
 Identities = 209/304 (68%), Positives = 251/304 (82%), Gaps = 11/304 (3%)

>gb|AAN70889.1|AE016733_1 (AE016794) response regulator [Pseudomonas putida KT2440]
          Length = 296

 Score =  384 bits (987), Expect = e-106
 Identities = 202/303 (66%), Positives = 239/303 (78%), Gaps = 10/303 (3%)






 
Structural Features:
cd00156, REC, Signal receiver domain
CD-Length = 113 residues, 100.0% aligned
Score =  108 bits (272), Expect = 7e-25
Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 4/117 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5167




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22312




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34714




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2582_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2582
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4287
                           PA5364_tr
                           translation of PA5364
                           300
                           99.99
                           99.99
                           0
                           1515.0
     

     
     
125856
                           gb|AAG08749.1|AE004948_5
                           (AE004948) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           300
                           99.99
                           99.99
                           0
                           1515.0
     

     
     
125857
                           gb|AAO58901.1|
                           (AE016876) response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           304
                           68.75
                           82.56
                           11
                           1035.0
     

     
     
125858
                           gb|AAN70889.1|AE016733_1
                           (AE016794) response regulator [Pseudomonas putida KT2440]
                           303
                           66.66
                           78.87
                           10
                           999.0
     

     






      

          
GC ORFID: 45584How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5364Glimmer Score: 

          
Start: 5568876Stop: 5567974

          
Length: 903


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5364 translation of PA5364Homolog Bit Score 588.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4203 (ORF: BLASTX 390.0), t_PA5364 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAAAGTCAGCGCGCTAGTGGTGGATGACGCCCCCTTCATCCGAGATCTGATGAAGAAAGGGTTGCGC 
GACAACTTCCCCGGCCTTCATATCGAGGAGGCCGTGAACGGCCGCAAGGCCCAGCAACTGCTCAGTCGGCAG 
AACGTCGACCTGATCCTCTGCGACTGGGAGATGCCGGAGATGTCCGGCCTCGAACTGCTGACCTGGTGCCGT 
GCCCAGGAAAACCTCAAGACTACCCCGTTCATCATGGTCACCAGTCGCGGCGACAAGGAGAACGTGGTCCAG 
GCGATCCAGGCCGGGGTGTCGGACTACATCGGCAAGCCATTCTCCAATGACCAGCTGGTGGCCAAGATCAAG 
AAGGCCCTGAGCCGCAGCGGCAAGCTGGAAGCCCTGGCGGCCCACGCGCCGCGCCGGGAGATCGCCAGCGGC 
ATGGCCAACGATTCGCTGGCCGCTCTGACCGGCGGTCGCGCCGAGGTGATCAAGCCCGCCGCCAGTCCGGCA 
AAACCGGCCCCCGCCCCGAAGCCGGCTTCGGCTCCCCAGGCCAGCGCGCGTCCCGCCGGCAGCGGCAACCCG 
CTGGGCCAGGCGCAATTGCGCCTGCCGCAGAGCAGCATGCCCTGCGTGATCAAGGCGGTCAGCCTGAAGGAA 
GCGCAACTGGTGGTGAAGCGCGCCGACCCGCTGCCGCAGGTGCTGGAAAGCGCGGTGCTGGACCTCGAGGAA 
AACAGCGACGTGGCGCGCCTGAACGGCTACCTGCACGCCATCGCCGCGCTGGAGCCGAAGCCGGATAGCGAT 
TGGCTGCTGCTGACCCTGCGTTTCGTCGACCGCGACCCGCAGAAGCTCGACTACCTGTCGCGCCTGATCGCC 
CGCGGAAGTACCCAGAAGCACTACGTTCCCGGCGCCTGA