ViewGene
Locus Name:
GeneID:
Location:

GeneID:2540
TrivialName: PA14_69760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69760
PAO1 Ortholog Locus:PA5284
Sequence Length:915
Protein Length:304
Start: 6222811
Stop: 6221897
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08669.1|AE004941_2 (AE004941) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 298/304 (98%), Positives = 303/304 (99%)
Sequence:
ATGGAGTTCAAGACGTTCCGTCGAACCCTGCTGATCGCGGCAGTCCTGTTCGTTCCCGCCGGCACCAGCATG
GCTGCCAATCTGTACGCTTTCGGCGGCCGCGATATCGCCGTCCCCTCGATCCTTCCCGAGGGAAACGTCACG
TCGCGCTACACGTTCACTCCCATGCAACTGTGCGGCAAGCCCAGCTGCGATCTCATCGGCGTCTCTCTGTAC
AACAAGGGAAGTGTCTGGGACCCGGTCGATGGTCCGGACCTGAATACCAACGTGCCGGGCCTTTCGGTGCGC
CTGCTGCTGGATGGCATACCGGCGAGCAGCCGTTTCAAGGGCACTTTCTCGCAAATCGCGGAGGTCCAGTTG
TTCCGCAACTCGACGCCGCTCTCCGACGGCCAGTTCGCGAGCGGAGCGTTCAACTCGTACTTCCTCATTACC
TACAAGGACGGGCTTGTCGCGTCTGGCACCTCTTCCGTCAGGTTGACCGGGAGCGTCACCACGATCAATGCG
ACCTGCCAGGTCGCCGACCAGACCGTGAAGCTGCAGTCGATCGCTGCCGCCCGGCTGAACGGCGTCGGCACC
TACGCGGCCGTTACCCCGTTCAATCTCGTAGTGGCCGGCTGTCCTCGCGGGTACAACCGCGTCGGCTACAGC
CTTCAAGCGGTGGGGGGGGCGGTGGCCGAAGGCTCGGGTGTGCTGCCGCGCCTGGCGGGCAGCACCGCGACC
GGCGTATCGATCCGGGTCACCGACGAGGCCGGCGTGCCGCTACGGATGGGACTCTCGTTGCCGGTGACCGCG
TACGACAAGAACACCGGCGGGGCGTACTGGATCCCGATGAAAGCGTCCTATGTGCAGACCGCCGAGAAAATC
ACGCCCGGCTCGGTCCTGGCCGCGATGGTGATCCTGCTCGACTACCAGTGA
Translation:
MEFKTFRRTLLIAAVLFVPAGTSMAANLYAFGGRDIAVPSILPEGNVTSRYTFTPMQLCGKPSCDLIGVSLY
NKGSVWDPVDGPDLNTNVPGLSVRLLLDGIPASSRFKGTFSQIAEVQLFRNSTPLSDGQFASGAFNSYFLIT
YKDGLVASGTSSVRLTGSVTTINATCQVADQTVKLQSIAAARLNGVGTYAAVTPFNLVVAGCPRGYNRVGYS
LQAVGGAVAEGSGVLPRLAGSTATGVSIRVTDEAGVPLRMGLSLPVTAYDKNTGGAYWIPMKASYVQTAEKI
TPGSVLAAMVILLDYQ*
AnnotationID:2548GeneID:2540
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 08:08:29
Gene Name:
Confidence Code:3
GeneProduct:putative fimbrial protein
Cell Localization:()
Synonyms:PA5284
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:putative P pilus assembly protein
Functional Category Confidence Code:5
COGs:pfam00419,COG3539
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00419, Fimbrial, Fimbrial protein.
CD-Length = 151 residues,  98.7% aligned
Score = 68.4 bits (167), Expect = 1e-12
Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 7/152 (4%)

COG3539, FimA, P pilus assembly protein, pilin FimA 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 184 residues,  90.2% aligned
Score = 67.9 bits (165), Expect = 1e-12
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 9/166 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5083




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22228




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34809




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2540_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2540
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4233
                           PA5284_tr
                           translation of PA5284
                           304
                           98.02
                           99.67
                           0
                           1527.0
     

     
     
124833
                           gb|AAG08669.1|AE004941_2
                           (AE004941) hypothetical protein PA5284 [Pseudomonas aeruginosa PAO1]
                           304
                           98.02
                           99.67
                           0
                           1527.0
     

     






      

          
GC ORFID: 45542How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5284Glimmer Score: 

          
Start: 5486498Stop: 5485584

          
Length: 915


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5284 translation of PA5284Homolog Bit Score 592.0

          
Other Homologs:  t_PA5284 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGTTCAAGACGTTCCGTCGAACCCTGCTGATCGCGGCAGTCCTGTTCGTTCCCGCCGGCACCAGCATG 
GCTGCCAATCTGTACGCTTTCGGCGGCCGCGATATCGCCGTCCCCTCGATCCTTCCCGAGGGAAACGTCACG 
TCGCGCTACACGTTCACTCCCATGCAACTGTGCGGCAAGCCCAGCTGCGATCTCATCGGCGTCTCTCTGTAC 
AACAAGGGAAGTGTCTGGGACCCGGTCGATGGTCCGGACCTGAATACCAACGTGCCGGGCCTTTCGGTGCGC 
CTGCTGCTGGATGGCATACCGGCGAGCAGCCGTTTCAAGGGCACTTTCTCGCAAATCGCGGAGGTCCAGTTG 
TTCCGCAACTCGACGCCGCTCTCCGACGGCCAGTTCGCGAGCGGAGCGTTCAACTCGTACTTCCTCATTACC 
TACAAGGACGGGCTTGTCGCGTCTGGCACCTCTTCCGTCAGGTTGACCGGGAGCGTCACCACGATCAATGCG 
ACCTGCCAGGTCGCCGACCAGACCGTGAAGCTGCAGTCGATCGCTGCCGCCCGGCTGAACGGCGTCGGCACC 
TACGCGGCCGTTACCCCGTTCAATCTCGTAGTGGCCGGCTGTCCTCGCGGGTACAACCGCGTCGGCTACAGC 
CTTCAAGCGGTGGGGGGGGCGGTGGCCGAAGGCTCGGGTGTGCTGCCGCGCCTGGCGGGCAGCACCGCGACC 
GGCGTATCGATCCGGGTCACCGACGAGGCCGGCGTGCCGCTACGGATGGGACTCTCGTTGCCGGTGACCGCG 
TACGACAAGAACACCGGCGGGGCGTACTGGATCCCGATGAAAGCGTCCTATGTGCAGACCGCCGAGAAAATC 
ACGCCCGGCTCGGTCCTGGCCGCGATGGTGATCCTGCTCGACTACCAGTGA