ViewGene
Locus Name:
GeneID:
Location:

GeneID:2537
TrivialName: PA14_17410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17410
PAO1 Ortholog Locus:PA3628
Sequence Length:852
Protein Length:283
Start: 1494189
Stop: 1495040
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07016.1|AE004783_1 (AE004783) probable esterase [Pseudomonas aeruginosa PAO1]
Identities = 280/283 (98%), Positives = 281/283 (99%)
Sequence:
GTGAAGGATTCCCTCGAACTGATCGGCAGCCAGAAGACCTTCGGCGGCTGGCACCAGCGTTACCGTCATTTT
TCCCGGACCCTGAACTGCGAGATGGTCTTCGCCATCTACCTGCCGCCCCAGGCCGAGCCGGAGGCGGCGCTG
CCGGCCCTGTACTGGCTGTCCGGGCTGACCTGTACCGACGAGAACTTCATGCAGAAGGCCGGCGCCCAGCGG
GTCGCCGCCGAACTGGGATTGGTACTGGTGGCGCCGGATACCAGCCCGCGCGGCAGCGGTGTCCCCGGCGAT
CCCGACGGCGCCTGGGACTTCGGCCTGGGCGCAGGCTTCTACCTGAACGCCACGCAGGAGCCCTGGTCCGCG
CACTACCGCATGCACGACTACGTGGTGCACGAGTTGCCGGCGCTGATCGAGGCGCATTTCCCGGTGTCCCGG
CGGCGCGGCATCAGCGGGCACTCGATGGGCGGGCATGGCGCGCTGGTCTGCGCGCTGCGCAACCCGGGGCAC
TACCTGTCGCTGTCGGCCTTTGCGCCGATCTGCCATCCGAGCGATTGCCCCTGGGGCCAGAAGGCGTTCTCT
CGCTACCTGGGCGAGGACCCGGCGGCCTGGCGCGAGTGGGATGCCTGTGCGTTGCTCGAGGGTGCGTCCGAA
CGCTTGCCGATCCTGGTCGACCAGGGCGAGCGCGACGACTTCCTCGCCGTCCAGCTCAAGCCGGAAGCGCTA
CGCAATGCGGCGGACAAGGCCGGCCACCCGCTGGAGCTGCGTCTGCAACCAGGCTACGACCACAGCTACTAC
TTCATCGCCAGTTTCATCGAGGATCACCTGCGCCACCATGCCCAGGTTCTCAACGGTTGA
Translation:
MKDSLELIGSQKTFGGWHQRYRHFSRTLNCEMVFAIYLPPQAEPEAALPALYWLSGLTCTDENFMQKAGAQR
VAAELGLVLVAPDTSPRGSGVPGDPDGAWDFGLGAGFYLNATQEPWSAHYRMHDYVVHELPALIEAHFPVSR
RRGISGHSMGGHGALVCALRNPGHYLSLSAFAPICHPSDCPWGQKAFSRYLGEDPAAWREWDACALLEGASE
RLPILVDQGERDDFLAVQLKPEALRNAADKAGHPLELRLQPGYDHSYYFIASFIEDHLRHHAQVLNG*
AnnotationID:2545GeneID:2537
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 20:08:41
Gene Name:
Confidence Code:3
GeneProduct:putative esterase
Cell Localization:()
Synonyms:PA3628
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0627,pfam00756
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67238.1|AE016350_11 (AE016780) esterase, putative [Pseudomonas putida KT2440]
          Length = 284

 Score =  458 bits (1178), Expect = e-128
 Identities = 214/280 (76%), Positives = 235/280 (83%), Gaps = 2/280 (0%)

>dbj|BAB36469.1| (AP002560) putative esterase [Escherichia coli O157:H7]
          Length = 278

 Score =  362 bits (930), Expect = 1e-99
 Identities = 178/279 (63%), Positives = 208/279 (74%), Gaps = 5/279 (1%)








 
Structural Features:
COG0627, Predicted esterase 
CD-Length = 316 residues,  98.7% aligned
Score =  268 bits (685), Expect = 7e-73
Identities = 118/314 (37%), Positives = 152/314 (48%), Gaps = 33/314 (10%)

pfam00756, Esterase, Putative esterase.
CD-Length = 251 residues, 100.0% aligned
Score =  172 bits (438), Expect = 3e-44
Identities = 97/274 (35%), Positives = 125/274 (45%), Gaps = 37/274 (13%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14617




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22222




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2537
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4230
                           PA3628_tr
                           translation of PA3628
                           283
                           98.93
                           99.29
                           0
                           1527.0
     

     
     
124775
                           gb|AAG07016.1|AE004783_1
                           (AE004783) probable esterase [Pseudomonas aeruginosa PAO1]
                           283
                           98.58
                           99.29
                           0
                           1524.0
     

     
     
124776
                           gb|AAN67238.1|AE016350_11
                           (AE016780) esterase, putative [Pseudomonas putida KT2440]
                           286
                           74.82
                           82.16
                           5
                           1175.0
     

     
     
124777
                           gb|AAO55079.1|
                           (AE016861) esterase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           283
                           72.43
                           82.68
                           2
                           1142.0
     

     
     
124779
                           gb|AAN53076.1|AE015922_5
                           (AE015922) esterase, putative [Shewanella oneidensis MR-1]
                           283
                           63.25
                           75.97
                           4
                           951.0
     

     






      

          
GC ORFID: 45539How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3628Glimmer Score: 

          
Start: 3459748Stop: 3458897

          
Length: 852


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3628 translation of PA3628Homolog Bit Score 592.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4645 (ORF: BLASTX 447.0), t_PA3628 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAGGATTCCCTCGAACTGATCGGCAGCCAGAAGACCTTCGGCGGCTGGCACCAGCGTTACCGTCATTTT 
TCCCGGACCCTGAACTGCGAGATGGTCTTCGCCATCTACCTGCCGCCCCAGGCCGAGCCGGAGGCGGCGCTG 
CCGGCCCTGTACTGGCTGTCCGGGCTGACCTGTACCGACGAGAACTTCATGCAGAAGGCCGGCGCCCAGCGG 
GTCGCCGCCGAACTGGGATTGGTACTGGTGGCGCCGGATACCAGCCCGCGCGGCAGCGGTGTCCCCGGCGAT 
CCCGACGGCGCCTGGGACTTCGGCCTGGGCGCAGGCTTCTACCTGAACGCCACGCAGGAGCCCTGGTCCGCG 
CACTACCGCATGCACGACTACGTGGTGCACGAGTTGCCGGCGCTGATCGAGGCGCATTTCCCGGTGTCCCGG 
CGGCGCGGCATCAGCGGGCACTCGATGGGCGGGCATGGCGCGCTGGTCTGCGCGCTGCGCAACCCGGGGCAC 
TACCTGTCGCTGTCGGCCTTTGCGCCGATCTGCCATCCGAGCGATTGCCCCTGGGGCCAGAAGGCGTTCTCT 
CGCTACCTGGGCGAGGACCCGGCGGCCTGGCGCGAGTGGGATGCCTGTGCGTTGCTCGAGGGTGCGTCCGAA 
CGCTTGCCGATCCTGGTCGACCAGGGCGAGCGCGACGACTTCCTCGCCGTCCAGCTCAAGCCGGAAGCGCTA 
CGCAATGCGGCGGACAAGGCCGGCCACCCGCTGGAGCTGCGTCTGCAACCAGGCTACGACCACAGCTACTAC 
TTCATCGCCAGTTTCATCGAGGATCACCTGCGCCACCATGCCCAGGTTCTCAACGGTTGA