ViewGene
Locus Name:
GeneID:
Location:

GeneID:2518
TrivialName: PA14_09260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09260
PAO1 Ortholog Locus:PA4227
Sequence Length:891
Protein Length:296
Start: 784624
Stop: 785514
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07615.1|AE004840_1 (AE004840) transcriptional regulator PchR [Pseudomonas aeruginosa PAO1]
Identities = 296/296 (100%), Positives = 296/296 (100%)
Sequence:
ATGACCATCACCATCATTGCTCCGCCACAGGCCGATGCCGCCGCGCCGGCACCGGGCAACCGGCCCGGCGTC
GCGCACATCGATCCGAATATGAAGCTGGTGACCGGAACCTTCTGTTCGGCCAGCGAGGACTGGTTCGAGGAA
CCGCTGGAGCGCGGCCTGCGCCTGATCCTCGTGCAGAGCGGCCAGTTGCGCTGCCGGATTCCCGGCCAGCCC
GAGCACCTCATCGAGGGGCCGAGCCTGTGCACCATCGCCAACGATGGCGACTTCACCTCGGCGCAGATCTAC
GGCACCGACAAGCCGTTGCGCTACACCATCGTCCAGCTCGGCGTCGAAGCCCTGGACAGCCGCCTCGGCTGG
CTGCCCGAGCAACTGATACGCCGCCCCGGCGGCGATCCGCGGATCATGAGCTGCCCGGCGCCGCGGGCGATG
CAGGCGTTGGCCTCGCAGATCGCCACCTGCCAGATGCTCGGTCCGACCCGCGATCTCTACCTCGGCGGCAAG
GCCCTGGAGTTGGCCGCGCTCAGCGCCCAGTTCCTTTCCGGCGAGGGGCGCCCCGTCGAGGAGCCGCGCATC
ACCTGCTCGGAGGTCGAGCGCATCCACGCCGCCCGCGACCTGCTGGTCGGCGCCTTGCAGGAACCACCGTCG
CTGGACACGCTGGCCAGCCGCGTGGGCATGAACCCGCGCAAGCTGACCGCCGGCTTCCGCAAGGTGTTCGGC
GCCAGCGTATTCGGCTACCTGCAGGAGTACCGCCTGCGCGAGGCGCACCGGATGCTCTGCGACGAAGAGGCG
AACGTCTCCACGGTGGCCTACCGGGTGGGCTACAGCCCGGCGCATTTCTCCATCGCTTTCCGCAAGCGCTAC
GGCATCTCCCCCAGCGAGATCCGCTGA
Translation:
MTITIIAPPQADAAAPAPGNRPGVAHIDPNMKLVTGTFCSASEDWFEEPLERGLRLILVQSGQLRCRIPGQP
EHLIEGPSLCTIANDGDFTSAQIYGTDKPLRYTIVQLGVEALDSRLGWLPEQLIRRPGGDPRIMSCPAPRAM
QALASQIATCQMLGPTRDLYLGGKALELAALSAQFLSGEGRPVEEPRITCSEVERIHAARDLLVGALQEPPS
LDTLASRVGMNPRKLTAGFRKVFGASVFGYLQEYRLREAHRMLCDEEANVSTVAYRVGYSPAHFSIAFRKRY
GISPSEIR*
AnnotationID:2526GeneID:2518
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 07:07:12
Gene Name:pchR
Confidence Code:1
GeneProduct:transcriptional regulator PchR
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB73883.1| (AP003588) transcriptional regulator [Nostoc sp. PCC 7120]
          Length = 335

 Score =  125 bits (314), Expect = 3e-28
 Identities = 63/151 (41%), Positives = 98/151 (64%), Gaps = 1/151 (0%)

>dbj|BAA16608.1| (D90899) regulatory protein; PchR [Synechocystis sp. PCC 6803]
          Length = 330

 Score =  103 bits (256), Expect = 2e-21
 Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 2/151 (1%)








 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 93.0 bits (231), Expect = 4e-20
Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 1/84 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5039




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22185




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36926




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2518_cdd.html


    		




 
URL:

















    ReferenceID:37014




  
Author/Investigator(s):
        Heinrichs DE, Poole K.





  
Title:
        Cloning and sequence analysis of a gene (pchR) encoding an AraC family activator of pyochelin and ferripyochelin receptor synthesis in Pseudomonas aeruginosa.




  
PubMed:
        8397186


MedLine:
        




    
Source:
J Bacteriol. 1993 Sep;175(18):5882-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8397186









           
Homologs By Global Alignment 

           

       



     
Gene ID:2518
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4200
                           PA4227_tr
                           translation of PA4227
                           296
                           99.99
                           99.99
                           0
                           1537.0
     

     
     
124081
                           gb|AAG07615.1|AE004840_1
                           (AE004840) transcriptional regulator PchR [Pseudomonas aeruginosa PAO1]
                           296
                           99.99
                           99.99
                           0
                           1537.0
     

     
     
124082
                           gb|AAA25926.1|
                           (L11657) pchR [Pseudomonas aeruginosa]
                           296
                           99.99
                           99.99
                           0
                           1537.0
     

     
     
124091
                           dbj|BAC88261.1|
                           (AP006569) AraC family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421]
                           336
                           30.95
                           46.72
                           53
                           290.0
     

     
     
124083
                           dbj|BAC88265.1|
                           (AP006569) AraC family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421]
                           368
                           29.61
                           41.84
                           99
                           315.0
     

     






      

          
GC ORFID: 45520How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4227Glimmer Score: 

          
Start: 4169313Stop: 4168423

          
Length: 891


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4227 translation of PA4227Homolog Bit Score 596.0

          
Other Homologs:  t_PA4227 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCATCACCATCATTGCTCCGCCACAGGCCGATGCCGCCGCGCCGGCACCGGGCAACCGGCCCGGCGTC 
GCGCACATCGATCCGAATATGAAGCTGGTGACCGGAACCTTCTGTTCGGCCAGCGAGGACTGGTTCGAGGAA 
CCGCTGGAGCGCGGCCTGCGCCTGATCCTCGTGCAGAGCGGCCAGTTGCGCTGCCGGATTCCCGGCCAGCCC 
GAGCACCTCATCGAGGGGCCGAGCCTGTGCACCATCGCCAACGATGGCGACTTCACCTCGGCGCAGATCTAC 
GGCACCGACAAGCCGTTGCGCTACACCATCGTCCAGCTCGGCGTCGAAGCCCTGGACAGCCGCCTCGGCTGG 
CTGCCCGAGCAACTGATACGCCGCCCCGGCGGCGATCCGCGGATCATGAGCTGCCCGGCGCCGCGGGCGATG 
CAGGCGTTGGCCTCGCAGATCGCCACCTGCCAGATGCTCGGTCCGACCCGCGATCTCTACCTCGGCGGCAAG 
GCCCTGGAGTTGGCCGCGCTCAGCGCCCAGTTCCTTTCCGGCGAGGGGCGCCCCGTCGAGGAGCCGCGCATC 
ACCTGCTCGGAGGTCGAGCGCATCCACGCCGCCCGCGACCTGCTGGTCGGCGCCTTGCAGGAACCACCGTCG 
CTGGACACGCTGGCCAGCCGCGTGGGCATGAACCCGCGCAAGCTGACCGCCGGCTTCCGCAAGGTGTTCGGC 
GCCAGCGTATTCGGCTACCTGCAGGAGTACCGCCTGCGCGAGGCGCACCGGATGCTCTGCGACGAAGAGGCG 
AACGTCTCCACGGTGGCCTACCGGGTGGGCTACAGCCCGGCGCATTTCTCCATCGCTTTCCGCAAGCGCTAC 
GGCATCTCCCCCAGCGAGATCCGCTGA