ViewGene
Locus Name:
GeneID:
Location:

GeneID:2505
TrivialName: PA14_38090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38090
PAO1 Ortholog Locus:PA2043
Sequence Length:903
Protein Length:300
Start: 3398770
Stop: 3397868
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05431.1|AE004630_8 (AE004630) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 292/300 (97%), Positives = 293/300 (97%)
Sequence:
ATGTCGTCTCCTTCCTTGCCCGACGCCAGTCTCCGCGCCAGCACCCTGCATCTGCCGGCCGGCCCCTGGAGC
ACCGTGCTCGATTGTCTCTGCGCGCGTTTCCCGGCCATCGACCGCGATACCTGGCTGGCGCGCATGCAGCGG
GGCCGGGTGCTGGACGCCGAGGGGCGTGCGCTGGGCCCGCAGGCGGCGTATCGCGAAGGCCTGCGTGTGCAC
TACTTCCGCGAGTTGCCGGCGGAGGCGCCGATCCCTTTCGAGGCGCGCATCCTGTACCGCGACGAGCATCTG
CTGGTGGCGGACAAGCCGCACTTCCTGCCGGTGATGCCGGCCGGCGGCTATGTCGAGCAGACGCTCCTGGCG
CGGCTGGCCCGCAGCACCGGCAATCGCGACCTGGTGCCGCTGCATCGGATCGACCGGCATACCGCCGGGCTG
GTGCTGTTCTCGACCAATCCCGGCAGCCGCGGGCGCTACCAGGCGCTGTTCCGCGAGCGGCGCATCGACAAG
TACTACGAAGCGATCGCTCCGGCCTTGCCGCGACTGGACTTCCCGTTGCTGCGCAGGACCCGCCTGGTGCCC
GGCGAGCCGTTCTTCCGCATGCGCGAAGGCGAGGGCGAGCCGAACAGCGAGACGCGCATCGAGGTCGCCGAG
CGCAACGGCCGCTGGTGGCGCTACCGGCTGTATCCGGTGACCGGCAAGAAGCACCAGCTGCGCGTGCACCTC
GCGGCACTCGGCGCGGGTATCCAGAACGACGGGTTCTATCCCGAGCTGCTGGACGCCGAGGACAGCCCCGAC
GATTACCGGCGGCCGCTCAAGCTGCTGGCCAGGGGGCTGCGCTTCGACGACCCGCTGAGCGGGGAGAGGCGT
ACGTTCGAATCCGGGCTGCGGCTCGATTGGCAGGTGTAG
Translation:
MSSPSLPDASLRASTLHLPAGPWSTVLDCLCARFPAIDRDTWLARMQRGRVLDAEGRALGPQAAYREGLRVH
YFRELPAEAPIPFEARILYRDEHLLVADKPHFLPVMPAGGYVEQTLLARLARSTGNRDLVPLHRIDRHTAGL
VLFSTNPGSRGRYQALFRERRIDKYYEAIAPALPRLDFPLLRRTRLVPGEPFFRMREGEGEPNSETRIEVAE
RNGRWWRYRLYPVTGKKHQLRVHLAALGAGIQNDGFYPELLDAEDSPDDYRRPLKLLARGLRFDDPLSGERR
TFESGLRLDWQV*
AnnotationID:2513GeneID:2505
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:58
Gene Name:
Confidence Code:3
GeneProduct:putative pseudouridylate synthase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:putative ribosomal pseudouridine synthase
Functional Category Confidence Code:5
COGs:COG0564,pfam00849
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM43405.1| (AE012545) pseudouridylate synthase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 298

 Score =  336 bits (862), Expect = 9e-92
 Identities = 174/290 (60%), Positives = 201/290 (69%), Gaps = 2/290 (0%)

>emb|CAB59478.1| (AL939109) putative ribosomal pseudouridine synthase [Streptomyces
           coelicolor A3(2)]
          Length = 324

 Score =  236 bits (602), Expect = 1e-61
 Identities = 138/297 (46%), Positives = 168/297 (56%), Gaps = 4/297 (1%)








 
Structural Features:
COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific 
[Translation, ribosomal structure and biogenesis]
CD-Length = 289 residues,  93.1% aligned
Score =  171 bits (434), Expect = 1e-43
Identities = 85/280 (30%), Positives = 121/280 (43%), Gaps = 19/280 (6%)

pfam00849, PseudoU_synth_2, RNA pseudouridylate synthase.
CD-Length = 151 residues, 100.0% aligned
Score =  104 bits (261), Expect = 1e-23
Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 3/151 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5013




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22159




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32656




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2505_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2505
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4187
                           PA2043_tr
                           translation of PA2043
                           300
                           97.33
                           97.66
                           0
                           1540.0
     

     
     
123848
                           gb|AAG05431.1|AE004630_8
                           (AE004630) hypothetical protein PA2043 [Pseudomonas aeruginosa PAO1]
                           300
                           97.33
                           97.66
                           0
                           1540.0
     

     
     
123849
                           gb|AAM43405.1|
                           (AE012545) pseudouridylate synthase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           300
                           58.33
                           68.33
                           2
                           859.0
     

     
     
123850
                           gb|AAM39150.1|
                           (AE012085) pseudouridylate synthase [Xanthomonas axonopodis pv. citri str. 306]
                           312
                           55.76
                           64.42
                           26
                           833.0
     

     
     
123851
                           gb|AAF41278.1|
                           (AE002439) YabO/YceC/SfhB family protein [Neisseria meningitidis MC58]
                           317
                           43.84
                           59.62
                           27
                           638.0
     

     






      

          
GC ORFID: 45507How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2043Glimmer Score: 

          
Start: 1555140Stop: 1556042

          
Length: 903


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2043 translation of PA2043Homolog Bit Score 597.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1103 (ORF: BLASTX 398.0), t_PA2043 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGTCTCCTTCCTTGCCCGACGCCAGTCTCCGCGCCAGCACCCTGCATCTGCCGGCCGGCCCCTGGAGC 
ACCGTGCTCGATTGTCTCTGCGCGCGTTTCCCGGCCATCGACCGCGATACCTGGCTGGCGCGCATGCAGCGG 
GGCCGGGTGCTGGACGCCGAGGGGCGTGCGCTGGGCCCGCAGGCGGCGTATCGCGAAGGCCTGCGTGTGCAC 
TACTTCCGCGAGTTGCCGGCGGAGGCGCCGATCCCTTTCGAGGCGCGCATCCTGTACCGCGACGAGCATCTG 
CTGGTGGCGGACAAGCCGCACTTCCTGCCGGTGATGCCGGCCGGCGGCTATGTCGAGCAGACGCTCCTGGCG 
CGGCTGGCCCGCAGCACCGGCAATCGCGACCTGGTGCCGCTGCATCGGATCGACCGGCATACCGCCGGGCTG 
GTGCTGTTCTCGACCAATCCCGGCAGCCGCGGGCGCTACCAGGCGCTGTTCCGCGAGCGGCGCATCGACAAG 
TACTACGAAGCGATCGCTCCGGCCTTGCCGCGACTGGACTTCCCGTTGCTGCGCAGGACCCGCCTGGTGCCC 
GGCGAGCCGTTCTTCCGCATGCGCGAAGGCGAGGGCGAGCCGAACAGCGAGACGCGCATCGAGGTCGCCGAG 
CGCAACGGCCGCTGGTGGCGCTACCGGCTGTATCCGGTGACCGGCAAGAAGCACCAGCTGCGCGTGCACCTC 
GCGGCACTCGGCGCGGGTATCCAGAACGACGGGTTCTATCCCGAGCTGCTGGACGCCGAGGACAGCCCCGAC 
GATTACCGGCGGCCGCTCAAGCTGCTGGCCAGGGGGCTGCGCTTCGACGACCCGCTGAGCGGGGAGAGGCGT 
ACGTTCGAATCCGGGCTGCGGCTCGATTGGCAGGTGTAG