ViewGene
Locus Name:
GeneID:
Location:

GeneID:2495
TrivialName: PA14_16380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16380
PAO1 Ortholog Locus:PA3711
Sequence Length:906
Protein Length:301
Start: 1401805
Stop: 1400900
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07098.1|AE004790_3 (AE004790) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 301/301 (100%), Positives = 301/301 (100%)
Sequence:
ATGTTCGACTGGAATGACCTGCGTTTCTTCCTCGAGTTGCAGCGCAGCGGTCGCCTGCTGACCGCCGCCAAG
CGTCTCGGCACCACTCACGCCACGGTGGCCCGGCACATCGAGAACATCGAGCGCGACCTCGGCACCCAACTG
TTCGCCCAGCACACCGGCGGCTACCAGTTGACTCCGGCCGGCCAGGCGCTGCTCAAGCACGCCGAGGCGATG
GAGAACACCGCGCTGCTCGCCCAGGAAGAAATGAGCCAGAGCATCTCGCCGCTGGGGCAGATCCGCATCGGC
GTCACCGAAGGCCTCGGCAGCGTCTTCCTCGCTCCGCGCCTGGCGCAATTGATGCGCCACTACCCGGGCCTG
GAGGTCGAGCTGGTCTCGGTGCCGCGCTTCGTCAGCATCACCAACCGCGAAGCGGACATCGCCATCTCCCTA
GACCGGCCGAGCGCCGACCTGGTGATCACCCGCCTGCTGACCCGCTATCGCCTGGCGTTGTTCGCCAGCCCC
GCCTACCTGGAACAGGCGCCGCCGCTACGCGACCGCGACGACCTCGGCAGGCACCAGTGGATCGGCTACGTC
GACGACCTGCTGTTCAGCCAGGAACTGATGTTCCACCACAGTTTCTGCCGCCACCCGCAGGTCGTGTTCCGC
AGCACCAGCGTGGTCGCCCAGCAGCAGGCGGCACAGGCCGGCATCGGCCTGGCGATCCTGCCGCACTTCATG
GGTAGCCGCGATCCGTTGCTGGTACCGGTGCTACCCGAGGAAAGCATCCAGCGCGAGTACTGGATGAGCACT
CGGCGGGAGCTGCACCGCTCGGTGCGCCTGCGGGTGGTCTGGGACTTCCTGCTGGAGCTGTGCCAGCGCGAG
CGGGAGGTTCTGCTCGGCCCTTCGGCGACGCCGCCGCCATGA
Translation:
MFDWNDLRFFLELQRSGRLLTAAKRLGTTHATVARHIENIERDLGTQLFAQHTGGYQLTPAGQALLKHAEAM
ENTALLAQEEMSQSISPLGQIRIGVTEGLGSVFLAPRLAQLMRHYPGLEVELVSVPRFVSITNREADIAISL
DRPSADLVITRLLTRYRLALFASPAYLEQAPPLRDRDDLGRHQWIGYVDDLLFSQELMFHHSFCRHPQVVFR
STSVVAQQQAAQAGIGLAILPHFMGSRDPLLVPVLPEESIQREYWMSTRRELHRSVRLRVVWDFLLELCQRE
REVLLGPSATPPP*
AnnotationID:2503GeneID:2495
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 07:07:25
Gene Name:
Confidence Code:3
GeneProduct:putative LysR-family transcriptional regulator
Cell Localization:()
Synonyms:PA3711
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65689.1|AE016195_10 (AE016774) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 295

 Score =  439 bits (1129), Expect = e-122
 Identities = 215/293 (73%), Positives = 253/293 (86%)

>emb|CAE42690.1| (BX640418) probable LysR-family transcriptional regulator
           [Bordetella pertussis]
          Length = 306

 Score =  242 bits (617), Expect = 2e-63
 Identities = 131/302 (43%), Positives = 186/302 (61%), Gaps = 7/302 (2%)






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.7% aligned
Score =  118 bits (296), Expect = 2e-27
Identities = 80/300 (26%), Positives = 118/300 (39%), Gaps = 15/300 (5%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues,  99.0% aligned
Score =  100 bits (249), Expect = 6e-22
Identities = 52/207 (25%), Positives = 78/207 (37%), Gaps = 8/207 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4993




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22139




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31840




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2495_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2495
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4176
                           PA3711_tr
                           translation of PA3711
                           301
                           99.99
                           99.99
                           0
                           1544.0
     

     
     
123739
                           gb|AAG07098.1|AE004790_3
                           (AE004790) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           301
                           99.99
                           99.99
                           0
                           1544.0
     

     
     
123740
                           gb|AAN65689.1|AE016195_10
                           (AE016774) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           301
                           71.42
                           84.05
                           6
                           1128.0
     

     
     
123741
                           gb|AAQ58976.1|
                           (AE016914) probable transcriptional regulator, Lys R family [Chromobacterium violaceum ATCC 12472]
                           305
                           52.45
                           70.81
                           4
                           819.0
     

     
     
123742
                           emb|CAE38568.1|
                           (BX640433) probable LysR-family transcriptional regulator [Bordetella parapertussis]
                           310
                           42.90
                           60.64
                           13
                           627.0
     

     






      

          
GC ORFID: 45497How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3711Glimmer Score: 

          
Start: 3552132Stop: 3553037

          
Length: 906


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3711 translation of PA3711Homolog Bit Score 599.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3577 (ORF: BLASTX 240.0), t_PA3711 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCGACTGGAATGACCTGCGTTTCTTCCTCGAGTTGCAGCGCAGCGGTCGCCTGCTGACCGCCGCCAAG 
CGTCTCGGCACCACTCACGCCACGGTGGCCCGGCACATCGAGAACATCGAGCGCGACCTCGGCACCCAACTG 
TTCGCCCAGCACACCGGCGGCTACCAGTTGACTCCGGCCGGCCAGGCGCTGCTCAAGCACGCCGAGGCGATG 
GAGAACACCGCGCTGCTCGCCCAGGAAGAAATGAGCCAGAGCATCTCGCCGCTGGGGCAGATCCGCATCGGC 
GTCACCGAAGGCCTCGGCAGCGTCTTCCTCGCTCCGCGCCTGGCGCAATTGATGCGCCACTACCCGGGCCTG 
GAGGTCGAGCTGGTCTCGGTGCCGCGCTTCGTCAGCATCACCAACCGCGAAGCGGACATCGCCATCTCCCTA 
GACCGGCCGAGCGCCGACCTGGTGATCACCCGCCTGCTGACCCGCTATCGCCTGGCGTTGTTCGCCAGCCCC 
GCCTACCTGGAACAGGCGCCGCCGCTACGCGACCGCGACGACCTCGGCAGGCACCAGTGGATCGGCTACGTC 
GACGACCTGCTGTTCAGCCAGGAACTGATGTTCCACCACAGTTTCTGCCGCCACCCGCAGGTCGTGTTCCGC 
AGCACCAGCGTGGTCGCCCAGCAGCAGGCGGCACAGGCCGGCATCGGCCTGGCGATCCTGCCGCACTTCATG 
GGTAGCCGCGATCCGTTGCTGGTACCGGTGCTACCCGAGGAAAGCATCCAGCGCGAGTACTGGATGAGCACT 
CGGCGGGAGCTGCACCGCTCGGTGCGCCTGCGGGTGGTCTGGGACTTCCTGCTGGAGCTGTGCCAGCGCGAG 
CGGGAGGTTCTGCTCGGCCCTTCGGCGACGCCGCCGCCATGA