ViewGene
Locus Name:
GeneID:
Location:

GeneID:2460
TrivialName: PA14_46200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46200
PAO1 Ortholog Locus:PA1411
Sequence Length:912
Protein Length:303
Start: 4108641
Stop: 4107730
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04800.1|AE004570_8 (AE004570) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 302/303 (99%), Positives = 302/303 (99%)
Sequence:
ATGCGTAAGTCCGCCGATGCCTTCGCCTTCCAGACGATGCTGTTGCTCTGCGTGATCTGGGGCATCCAGCAG
GTGACCATCAAGTGGGCGGCGACGGACATCGCGCCGGTCATGCAGGCGGCCATCCGTTCCGGCATCGCCGCC
GCCCTGGTCGGCCTGCTGATGTGCTGGCGCGGCGGCTGGGAGGGCTTGCGCCAGGGCACCCTGGGCGCCGGC
CTGCTGACCGGCACGCTGTTCGCCCTGGAGTTCCTGTTCATCGCCCTCGGCCTGCAATACACCACGGCTTCG
CACATGTCGGTGTTCCTCTATACCGCGCCGATCTTCTCTGCCCTCGGGCTGCACTTCCTGCTTCCCAGCGAA
CGCCTGCGGCCCTTGCAGTGGCTGGGCGTGGCGGTGTGCTTCGGCGGCATAGCGGTGGCCTTCGGCGGAGGC
CTGTCGTGGGCGGAAATGGATGGGCGGATGCTGCTCGGCGACGCTTTCGGCCTGCTCGCCGGGATGTCCTGG
GGCGCGACCACGGTGGCAGTGCGCGGCACCCGGCTGTCCGAGGCACCGCCAAGCCTGACGCTGTTCTACCAA
TTGTTCGTGGCATGCGCCGGGTTATTGCTGATCGCTCTTTTCAGCGGCCAGCTCGGCGAGGTCCGCTGGACC
CCGGTGAGCACCGCCAGCGTGCTGTTCCAGGGCGTGGTGGTGTCGTTCGCCAGCTACTTCTGCTGGTTCTGG
TTGCTGCGTCGCTACCTGGCGAACAACCTGGCGATCTTCTCCTTCATGACCCCCCTGTTCGGCGTCACCTTC
GGCGTATTGCTGCTGGGCGAGCCGCTCAGCCTGAACTTCGTCGCCGGCGCGGCGCTGGTCCTCGCCGGCATC
ACCCTGGTCAGCGGCGAGCAGTGGCTGCGACGCCTGCTGCGACGCTGA
Translation:
MRKSADAFAFQTMLLLCVIWGIQQVTIKWAATDIAPVMQAAIRSGIAAALVGLLMCWRGGWEGLRQGTLGAG
LLTGTLFALEFLFIALGLQYTTASHMSVFLYTAPIFSALGLHFLLPSERLRPLQWLGVAVCFGGIAVAFGGG
LSWAEMDGRMLLGDAFGLLAGMSWGATTVAVRGTRLSEAPPSLTLFYQLFVACAGLLLIALFSGQLGEVRWT
PVSTASVLFQGVVVSFASYFCWFWLLRRYLANNLAIFSFMTPLFGVTFGVLLLGEPLSLNFVAGAALVLAGI
TLVSGEQWLRRLLRR*
AnnotationID:2468GeneID:2460
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 06:06:16
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA1411
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70101.1|AE016649_9 (AE016791) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 308

 Score =  426 bits (1094), Expect = e-118
 Identities = 213/303 (70%), Positives = 251/303 (82%), Gaps = 1/303 (0%)

>emb|CAE32924.1| (BX640444) integral membrane protein [Bordetella bronchiseptica]
          Length = 308

 Score =  337 bits (863), Expect = 7e-92
 Identities = 179/303 (59%), Positives = 213/303 (70%), Gaps = 3/303 (0%)

>emb|CAD14047.1| (AL646059) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Ralstonia
           solanacearum]
          Length = 301

 Score =  307 bits (787), Expect = 4e-83
 Identities = 157/291 (53%), Positives = 198/291 (68%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4923




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22069




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37429




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2460_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2460
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4128
                           PA1411_tr
                           translation of PA1411
                           303
                           99.66
                           99.66
                           0
                           1552.0
     

     
     
123030
                           gb|AAG04800.1|AE004570_8
                           (AE004570) hypothetical protein PA1411 [Pseudomonas aeruginosa PAO1]
                           303
                           99.66
                           99.66
                           0
                           1552.0
     

     
     
123031
                           gb|AAN70101.1|AE016649_9
                           (AE016791) membrane protein, putative [Pseudomonas putida KT2440]
                           309
                           68.93
                           81.22
                           7
                           1096.0
     

     
     
123032
                           emb|CAE32924.1|
                           (BX640444) integral membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           311
                           57.55
                           68.48
                           11
                           869.0
     

     
     
123033
                           emb|CAE36666.1|
                           (BX640427) integral membrane protein [Bordetella parapertussis]
                           311
                           57.55
                           68.48
                           11
                           869.0
     

     






      

          
GC ORFID: 45462How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1411Glimmer Score: 

          
Start: 845268Stop: 846179

          
Length: 912


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1411 translation of PA1411Homolog Bit Score 602.0

          
Other Homologs:  t_PA1411 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTAAGTCCGCCGATGCCTTCGCCTTCCAGACGATGCTGTTGCTCTGCGTGATCTGGGGCATCCAGCAG 
GTGACCATCAAGTGGGCGGCGACGGACATCGCGCCGGTCATGCAGGCGGCCATCCGTTCCGGCATCGCCGCC 
GCCCTGGTCGGCCTGCTGATGTGCTGGCGCGGCGGCTGGGAGGGCTTGCGCCAGGGCACCCTGGGCGCCGGC 
CTGCTGACCGGCACGCTGTTCGCCCTGGAGTTCCTGTTCATCGCCCTCGGCCTGCAATACACCACGGCTTCG 
CACATGTCGGTGTTCCTCTATACCGCGCCGATCTTCTCTGCCCTCGGGCTGCACTTCCTGCTTCCCAGCGAA 
CGCCTGCGGCCCTTGCAGTGGCTGGGCGTGGCGGTGTGCTTCGGCGGCATAGCGGTGGCCTTCGGCGGAGGC 
CTGTCGTGGGCGGAAATGGATGGGCGGATGCTGCTCGGCGACGCTTTCGGCCTGCTCGCCGGGATGTCCTGG 
GGCGCGACCACGGTGGCAGTGCGCGGCACCCGGCTGTCCGAGGCACCGCCAAGCCTGACGCTGTTCTACCAA 
TTGTTCGTGGCATGCGCCGGGTTATTGCTGATCGCTCTTTTCAGCGGCCAGCTCGGCGAGGTCCGCTGGACC 
CCGGTGAGCACCGCCAGCGTGCTGTTCCAGGGCGTGGTGGTGTCGTTCGCCAGCTACTTCTGCTGGTTCTGG 
TTGCTGCGTCGCTACCTGGCGAACAACCTGGCGATCTTCTCCTTCATGACCCCCCTGTTCGGCGTCACCTTC 
GGCGTATTGCTGCTGGGCGAGCCGCTCAGCCTGAACTTCGTCGCCGGCGCGGCGCTGGTCCTCGCCGGCATC 
ACCCTGGTCAGCGGCGAGCAGTGGCTGCGACGCCTGCTGCGACGCTGA