ViewGene
Locus Name:
GeneID:
Location:

GeneID:2426
TrivialName: PA14_48660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48660
PAO1 Ortholog Locus:PA1209
Sequence Length:936
Protein Length:311
Start: 4327830
Stop: 4328765
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04598.1|AE004551_2 (AE004551) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 308/311 (99%), Positives = 310/311 (99%)
Sequence:
ATGCGTGAACTGCAACCCCTGCTGGAGAACCACGGGCTGCTCCTGCTGTTCCTCAACGTGCTCTGCGAACAG
GCCGGGCTGCCGATCCCCGCCTACCCGGCGCTGATCGTCGCCGGCGCGCTGGCCATGCAGGGCGTCGGCGCA
CCGCTGGGCATGGTCCTGCTGGTGGTGGTGCTCGCCTGCCTGCTGGCGGACGTCGCCTGGTACCTGGCCGGG
CGCCGCTATGGCGGCTTCCTCCTGCGCAGCATCTGCAAGGTCTCGCTGTCCCAGGACAGTTGCATCCGCCAG
AGCCAGAACATGTACCTGCGGGTCGGTCCGAGGGCGCTGCTGATGTCGAAGTTCCTGCCCGGCGCCAGTGCG
TTGTCCACCACCCTGGCCGGCATGACCCGCACCCACCTGCGCCGCTTCCTCGCCTACGACGCCGCCGGCTCG
GCACTCTGGGCCGGTTCCGCGCTGCTGCTGGGGGTGATCTTCAGCGATGCGGTGGACCACCTGCTGGCCCTG
CTCAGCGACTACGCGGCCATCGGCGCGCTGCTGATCGCCGGCGCCTTCGCCGCCTTCATCGCCTGGAAGCTC
TGGCAGCGCCAGCGCCTGCTGTCGCGCAGCCGGCGGATTCCGCGAATCAGCGTGGAGGAACTGGAAAGCCTT
CGCGAACAGGGGCAATTGCCGGTGATCCTCGATGTTCGCGCCCACCACGAGGACGAGCCGAGCGGCATTCCG
GGAGCCATCCCGGTGGAGCTGAACGTGTCGCTGAAGGACCTGCCCGGCGACCTCAGGGACGCCAGCATCGTC
ATCTATTGCGCCTGTCCCCACGAACTTTCCGCCGCGATGCTTGCCCAGCGCCTCAACGCCTCCGGCTTCACC
CGCACCTGGGCGCTGGCCGGCGGCCTGGACGCCTGGCGCAAGGCCTACGGGCAGGTCGCGGCGAACGCCTGA
Translation:
MRELQPLLENHGLLLLFLNVLCEQAGLPIPAYPALIVAGALAMQGVGAPLGMVLLVVVLACLLADVAWYLAG
RRYGGFLLRSICKVSLSQDSCIRQSQNMYLRVGPRALLMSKFLPGASALSTTLAGMTRTHLRRFLAYDAAGS
ALWAGSALLLGVIFSDAVDHLLALLSDYAAIGALLIAGAFAAFIAWKLWQRQRLLSRSRRIPRISVEELESL
REQGQLPVILDVRAHHEDEPSGIPGAIPVELNVSLKDLPGDLRDASIVIYCACPHELSAAMLAQRLNASGFT
RTWALAGGLDAWRKAYGQVAANA*
AnnotationID:2434GeneID:2426
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 15:03:43
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA1209
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0586,cd01444
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE39669.1| (BX640436) possible integral-membrane protein [Bordetella
           parapertussis]
          Length = 313

 Score =  308 bits (790), Expect = 2e-83
 Identities = 166/305 (54%), Positives = 211/305 (69%), Gaps = 2/305 (0%)

>emb|CAD17547.1| (AL646078) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 326

 Score =  220 bits (560), Expect = 1e-56
 Identities = 132/310 (42%), Positives = 180/310 (58%), Gaps = 9/310 (2%)






 
Structural Features:
COG0586, DedA, Uncharacterized membrane-associated protein.
CD-Length = 208 residues,  94.2% aligned
Score =  121 bits (306), Expect = 2e-28
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 4/197 (2%)

cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and homologs are members 
of the Rhodanese Homology Domain superfamily.
CD-Length = 96 residues, 100.0% aligned
Score = 97.2 bits (242), Expect = 2e-21






   
Genomic Context:






   
Comment:


















    ReferenceID:4855




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22001




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37581




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2426_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2426
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4077
                           PA1209_tr
                           translation of PA1209
                           311
                           99.03
                           99.67
                           0
                           1560.0
     

     
     
122255
                           gb|AAG04598.1|AE004551_2
                           (AE004551) hypothetical protein PA1209 [Pseudomonas aeruginosa PAO1]
                           311
                           99.03
                           99.67
                           0
                           1560.0
     

     
     
122256
                           emb|CAE39669.1|
                           (BX640436) possible integral-membrane protein [Bordetella parapertussis]
                           316
                           53.48
                           68.03
                           8
                           795.0
     

     
     
122257
                           emb|CAE35340.1|
                           (BX640452) possible integral-membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           330
                           51.21
                           65.15
                           22
                           795.0
     

     
     
122258
                           gb|AAM36615.1|
                           (AE011807) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           340
                           41.47
                           57.64
                           39
                           609.0
     

     






      

          
GC ORFID: 45428How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1209Glimmer Score: 

          
Start: 626078Stop: 625143

          
Length: 936


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1209 translation of PA1209Homolog Bit Score 605.0

          
Other Homologs:  t_PA1209 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGAACTGCAACCCCTGCTGGAGAACCACGGGCTGCTCCTGCTGTTCCTCAACGTGCTCTGCGAACAG 
GCCGGGCTGCCGATCCCCGCCTACCCGGCGCTGATCGTCGCCGGCGCGCTGGCCATGCAGGGCGTCGGCGCA 
CCGCTGGGCATGGTCCTGCTGGTGGTGGTGCTCGCCTGCCTGCTGGCGGACGTCGCCTGGTACCTGGCCGGG 
CGCCGCTATGGCGGCTTCCTCCTGCGCAGCATCTGCAAGGTCTCGCTGTCCCAGGACAGTTGCATCCGCCAG 
AGCCAGAACATGTACCTGCGGGTCGGTCCGAGGGCGCTGCTGATGTCGAAGTTCCTGCCCGGCGCCAGTGCG 
TTGTCCACCACCCTGGCCGGCATGACCCGCACCCACCTGCGCCGCTTCCTCGCCTACGACGCCGCCGGCTCG 
GCACTCTGGGCCGGTTCCGCGCTGCTGCTGGGGGTGATCTTCAGCGATGCGGTGGACCACCTGCTGGCCCTG 
CTCAGCGACTACGCGGCCATCGGCGCGCTGCTGATCGCCGGCGCCTTCGCCGCCTTCATCGCCTGGAAGCTC 
TGGCAGCGCCAGCGCCTGCTGTCGCGCAGCCGGCGGATTCCGCGAATCAGCGTGGAGGAACTGGAAAGCCTT 
CGCGAACAGGGGCAATTGCCGGTGATCCTCGATGTTCGCGCCCACCACGAGGACGAGCCGAGCGGCATTCCG 
GGAGCCATCCCGGTGGAGCTGAACGTGTCGCTGAAGGACCTGCCCGGCGACCTCAGGGACGCCAGCATCGTC 
ATCTATTGCGCCTGTCCCCACGAACTTTCCGCCGCGATGCTTGCCCAGCGCCTCAACGCCTCCGGCTTCACC 
CGCACCTGGGCGCTGGCCGGCGGCCTGGACGCCTGGCGCAAGGCCTACGGGCAGGTCGCGGCGAACGCCTGA