ViewGene
Locus Name:
GeneID:
Location:

GeneID:2394
TrivialName: PA14_33440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33440
PAO1 Ortholog Locus:PA2417
Sequence Length:939
Protein Length:312
Start: 2942688
Stop: 2943626
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05805.1|AE004669_2 (AE004669) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 311/312 (99%), Positives = 311/312 (99%)
Sequence:
ATGAGTGGTGAGCTGGTGTTCGATCTGAACGCGCTTTTCATCTATGCCAAGGTGGTCGAGCACGGTGGCTTC
GCCCCCGCCGGGCGGGTGCTGGGGATTCCCAAGTCGACCATCAGCCGCAAGGTCGCGCAGCTCGAGGCGCGC
CTGGGCGTACGCCTGGTGCAGCGCTCGACGCGGCAATTCCAGGTGACCGAGATCGGCCAGGCCTATTACCGT
CATTGCGTGGCGATGACGGTGGAAGCGGAGGCTGCCGAGGACGTCATCGAACAGAACCGCTCGGAGCCGTGC
GGAATGGTCCGCCTGACCTGCTCGACGCCGCTGCTGCACTTCGAACTGGCGCCGATGCTGGCGCGCTTCATG
GCGCAGTATCCGAACGTCGAGCTGTACGTGAAGACCTTCAATCGCCGGGTCGACGTGATCGCCGAAGGCTAC
GACATCTCGCTGTCGCTGCGTTTCCCGCCGCTGGAGGACAGCGACCTGGTGATGAAGGTGCTGGCACGCAGT
CCGCAGGTGCTGGTGGCCAGCCCGGAGCTGCTGGCCCGCTACCGCCCGCCGGAGCTGCCGGCCGACCTGTCG
GCGATGCCCTACGTCGGCTGGGAGCGTTCGCGCCTGGACGGCAGCCTGCGGCTGGTCGGCGCGGATGGCAGC
AGCGCGGCCCTCAACCTGCGCCCGCAACTGCTCAGCGACGACCTCGGCACCTTGCGCCAGGCGGTGCTGGAG
GGCGTCGGGATCGGCGGCCTGCCGCTCTGCGTGGTCAGTCGCGACCTGGCCGAGCGCCGGCTGGTGCGGGTG
CTGCCGGAGTGGACGCCGGTGGAAGGCATGGTGGTGGCAATGTTCCCTTCGCGGCGCGGGCTGTTGCCTTCG
GTCCGCGCGCTGATCGACTTTCTCGCCGCAGGCTTCGCCGACGCCGCGCAGCGCCAGTACCCGGCGCCGGGC
TGA
Translation:
MSGELVFDLNALFIYAKVVEHGGFAPAGRVLGIPKSTISRKVAQLEARLGVRLVQRSTRQFQVTEIGQAYYR
HCVAMTVEAEAAEDVIEQNRSEPCGMVRLTCSTPLLHFELAPMLARFMAQYPNVELYVKTFNRRVDVIAEGY
DISLSLRFPPLEDSDLVMKVLARSPQVLVASPELLARYRPPELPADLSAMPYVGWERSRLDGSLRLVGADGS
SAALNLRPQLLSDDLGTLRQAVLEGVGIGGLPLCVVSRDLAERRLVRVLPEWTPVEGMVVAMFPSRRGLLPS
VRALIDFLAAGFADAAQRQYPAPG*
AnnotationID:2402GeneID:2394
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 11:11:29
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA2417
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70814.1|AE016725_7 (AE016793) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 303

 Score =  301 bits (770), Expect = 4e-81
 Identities = 155/296 (52%), Positives = 212/296 (71%), Gaps = 2/296 (0%)

>emb|CAE33320.1| (BX640445) LysR-family transcriptional regulator [Bordetella
           bronchiseptica]
          Length = 301

 Score =  299 bits (766), Expect = 1e-80
 Identities = 155/294 (52%), Positives = 201/294 (68%)

>emb|CAD17813.1| (AL646080) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 297

 Score =  293 bits (751), Expect = 7e-79
 Identities = 150/290 (51%), Positives = 203/290 (70%), Gaps = 1/290 (0%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription] 
CD-Length = 297 residues, 100.0% aligned
Score =  138 bits (349), Expect = 6e-34
Identities = 98/305 (32%), Positives = 144/305 (47%), Gaps = 13/305 (4%)

pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues, 100.0% aligned
Score =  103 bits (259), Expect = 2e-23







   
Genomic Context:






   
Comment:


















    ReferenceID:4791




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21937




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32961




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2394_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2394
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4044
                           PA2417_tr
                           translation of PA2417
                           312
                           99.67
                           99.67
                           0
                           1570.0
     

     
     
121438
                           gb|AAG05805.1|AE004669_2
                           (AE004669) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           312
                           99.67
                           99.67
                           0
                           1570.0
     

     
     
121439
                           gb|AAN70814.1|AE016725_7
                           (AE016793) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           316
                           50.63
                           67.72
                           17
                           769.0
     

     
     
121440
                           emb|CAE33320.1|
                           (BX640445) LysR-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           312
                           50.32
                           65.38
                           11
                           762.0
     

     
     
121442
                           emb|CAE37973.1|
                           (BX640431) LysR-family transcriptional regulator [Bordetella parapertussis]
                           312
                           50.00
                           65.38
                           11
                           758.0
     

     






      

          
GC ORFID: 45396How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2417Glimmer Score: 

          
Start: 2011228Stop: 2010290

          
Length: 939


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2417 translation of PA2417Homolog Bit Score 609.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7254 (ORF: BLASTX 249.0), t_PA1961 (ORF: BLASTX 214.0), t_PA2417 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGGTGAGCTGGTGTTCGATCTGAACGCGCTTTTCATCTATGCCAAGGTGGTCGAGCACGGTGGCTTC 
GCCCCCGCCGGGCGGGTGCTGGGGATTCCCAAGTCGACCATCAGCCGCAAGGTCGCGCAGCTCGAGGCGCGC 
CTGGGCGTACGCCTGGTGCAGCGCTCGACGCGGCAATTCCAGGTGACCGAGATCGGCCAGGCCTATTACCGT 
CATTGCGTGGCGATGACGGTGGAAGCGGAGGCTGCCGAGGACGTCATCGAACAGAACCGCTCGGAGCCGTGC 
GGAATGGTCCGCCTGACCTGCTCGACGCCGCTGCTGCACTTCGAACTGGCGCCGATGCTGGCGCGCTTCATG 
GCGCAGTATCCGAACGTCGAGCTGTACGTGAAGACCTTCAATCGCCGGGTCGACGTGATCGCCGAAGGCTAC 
GACATCTCGCTGTCGCTGCGTTTCCCGCCGCTGGAGGACAGCGACCTGGTGATGAAGGTGCTGGCACGCAGT 
CCGCAGGTGCTGGTGGCCAGCCCGGAGCTGCTGGCCCGCTACCGCCCGCCGGAGCTGCCGGCCGACCTGTCG 
GCGATGCCCTACGTCGGCTGGGAGCGTTCGCGCCTGGACGGCAGCCTGCGGCTGGTCGGCGCGGATGGCAGC 
AGCGCGGCCCTCAACCTGCGCCCGCAACTGCTCAGCGACGACCTCGGCACCTTGCGCCAGGCGGTGCTGGAG 
GGCGTCGGGATCGGCGGCCTGCCGCTCTGCGTGGTCAGTCGCGACCTGGCCGAGCGCCGGCTGGTGCGGGTG 
CTGCCGGAGTGGACGCCGGTGGAAGGCATGGTGGTGGCAATGTTCCCTTCGCGGCGCGGGCTGTTGCCTTCG 
GTCCGCGCGCTGATCGACTTTCTCGCCGCAGGCTTCGCCGACGCCGCGCAGCGCCAGTACCCGGCGCCGGGC 
TGA