ViewGene
Locus Name:
GeneID:
Location:

GeneID:2387
TrivialName: PA14_56800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56800
PAO1 Ortholog Locus:PA4368
Sequence Length:903
Protein Length:300
Start: 5060977
Stop: 5060075
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07756.1|AE004852_9 (AE004852) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 298/300 (99%), Positives = 299/300 (99%)
Sequence:
ATGGACTTCGACCTGCGCTGGCTGTTCATCGCCGCCAGCCTGGGGCTCTGCGCCTGGGCCGGCTGGCAGTTC
GTGCACCGCCTTGCCCGGGCGCGCCTGCTCGGCGACGTACCGACCTCGCGGATCCGTTCGGCGGCGCAGGGT
TTCGTCGAACTCTACGGGGTGCTCGAGGAGGGCCCGGAAGGCCCGCTGCAGGCTCCCTTGACCGGCAAGCCG
TGCCTGTGGTGGCGCTACCGCATCGAAGTCGAGGAAAAGCGCAGTGGCCGCGAGAAGGCCTGGCGCACCGTC
GACAAAGGTGCCAGCGAGTCGCCATTCGGCTTGCGCGATGCCACCGATGCCTGCCTGGTCGACCCACGCGGC
GCCGAGGTGCGACCCTTGACCCAGCAGCGCTGGGAGGCTTTTCGCGAAGCACCGATCGATACCCTGCGACTG
CTGGAGAGCTTCGGCACCCTGGTCGGCGGAGAGCGGCTTTACCGCTACACCGAGGAGCGCCTGCATGCCGGC
GAGCCGCTCTATGCGCTGGGCGAATTCCGCAGCAGCGGTGGCGGTCGCCAGGGACTCGATGCCGAACGGGCG
CAGGGTGCGGTGATCCGTGAATGGAAGGGCGATTTCCACGGGCTGCTGGCGCGCTTCGACAGCGACGGCAAC
GGCGAGTTGGACGAGCGCGAATGGAACCGGGTGCGCCTGGCGGCACGGCTGGAGGCCGAGGATCGGCATCGG
GCAAGCAGCGCCGCGCCGACCCGCCACCGGCTCGGCAAGCCGGGGGAGGCGCATCCCTTCATTCTCTCCAGC
CAGGGCGAGGACGATCTCGCCGTGCGACTGCGCCGCCAGGCGGCGGGGGCCGCGTTGCTCTGCCTGGGCAGC
GCGCTATTGGCGGGCTGGCTGTTCAGCCGCCTGTTCTGA
Translation:
MDFDLRWLFIAASLGLCAWAGWQFVHRLARARLLGDVPTSRIRSAAQGFVELYGVLEEGPEGPLQAPLTGKP
CLWWRYRIEVEEKRSGREKAWRTVDKGASESPFGLRDATDACLVDPRGAEVRPLTQQRWEAFREAPIDTLRL
LESFGTLVGGERLYRYTEERLHAGEPLYALGEFRSSGGGRQGLDAERAQGAVIREWKGDFHGLLARFDSDGN
GELDEREWNRVRLAARLEAEDRHRASSAAPTRHRLGKPGEAHPFILSSQGEDDLAVRLRRQAAGAALLCLGS
ALLAGWLFSRLF*
AnnotationID:2395GeneID:2387
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 06:06:59
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4368
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:4777




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21923




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2387
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4033
                           PA4368_tr
                           translation of PA4368
                           300
                           99.33
                           99.66
                           0
                           1573.0
     

     
     
121213
                           gb|AAG07756.1|AE004852_9
                           (AE004852) hypothetical protein PA4368 [Pseudomonas aeruginosa PAO1]
                           300
                           99.33
                           99.66
                           0
                           1573.0
     

     






      

          
GC ORFID: 45389How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4368Glimmer Score: 

          
Start: 4324653Stop: 4323751

          
Length: 903


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4368 translation of PA4368Homolog Bit Score 610.0

          
Other Homologs:  t_PA4368 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACTTCGACCTGCGCTGGCTGTTCATCGCCGCCAGCCTGGGGCTCTGCGCCTGGGCCGGCTGGCAGTTC 
GTGCACCGCCTTGCCCGGGCGCGCCTGCTCGGCGACGTACCGACCTCGCGGATCCGTTCGGCGGCGCAGGGT 
TTCGTCGAACTCTACGGGGTGCTCGAGGAGGGCCCGGAAGGCCCGCTGCAGGCTCCCTTGACCGGCAAGCCG 
TGCCTGTGGTGGCGCTACCGCATCGAAGTCGAGGAAAAGCGCAGTGGCCGCGAGAAGGCCTGGCGCACCGTC 
GACAAAGGTGCCAGCGAGTCGCCATTCGGCTTGCGCGATGCCACCGATGCCTGCCTGGTCGACCCACGCGGC 
GCCGAGGTGCGACCCTTGACCCAGCAGCGCTGGGAGGCTTTTCGCGAAGCACCGATCGATACCCTGCGACTG 
CTGGAGAGCTTCGGCACCCTGGTCGGCGGAGAGCGGCTTTACCGCTACACCGAGGAGCGCCTGCATGCCGGC 
GAGCCGCTCTATGCGCTGGGCGAATTCCGCAGCAGCGGTGGCGGTCGCCAGGGACTCGATGCCGAACGGGCG 
CAGGGTGCGGTGATCCGTGAATGGAAGGGCGATTTCCACGGGCTGCTGGCGCGCTTCGACAGCGACGGCAAC 
GGCGAGTTGGACGAGCGCGAATGGAACCGGGTGCGCCTGGCGGCACGGCTGGAGGCCGAGGATCGGCATCGG 
GCAAGCAGCGCCGCGCCGACCCGCCACCGGCTCGGCAAGCCGGGGGAGGCGCATCCCTTCATTCTCTCCAGC 
CAGGGCGAGGACGATCTCGCCGTGCGACTGCGCCGCCAGGCGGCGGGGGCCGCGTTGCTCTGCCTGGGCAGC 
GCGCTATTGGCGGGCTGGCTGTTCAGCCGCCTGTTCTGA