ViewGene
Locus Name:
GeneID:
Location:

GeneID:2355
TrivialName: PA14_65050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65050
PAO1 Ortholog Locus:PA4926
Sequence Length:936
Protein Length:311
Start: 5797274
Stop: 5796339
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08311.1|AE004905_9 (AE004905) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 303/311 (97%), Positives = 303/311 (97%)
Sequence:
ATGTCCGCACCCGCGCTTCGCTCCGTTCCGCTCCAGGGCGCCCGCTACCAGGTGCTGCACGACACCCATTAC
CGCTATGCGACGCCGGTCTCGCTGTCGCGGCAACTGGCGCATCTCTGGCCACGCGAATGCGCCTGGCAGGCC
TGTCATGAGCGGGAACTGCTGATCGAGCCGGGGCCGAGCCGGCGCGAGGATGGCCACGACGCATTCGGCAAT
CCGCTGAGCCGGCTGGCCTTCGAGCGTCCCCACGAGGCGCTGCGGGTCAGCGCGCGGCTGCAGGTCGAGGTG
TTCGCCCATGCGCCGGCGCAACTGGCCGCGTCGCCGGCATGGGAGCGCGTCGCCGCCGGGCTGGCATTTTCC
GGGCGGGCGCTGTCCGCCGCCGAACTGGAAGCCTGCCGCTACCGCGTCGAGTCGCCCTATGTGCGCATCCAG
CGGCGGTTCGTCGAGTTCGCCGCCGACTGCTTCCTGCCCGGACGGCCGTTGCTGGTGGTGGCGGCGGCACTG
ATGGGGAAGATCTTCCGCGAGTTCGCCTTCGATGCGCAGGCCACCCAGGTGGCGACGCCGCTGGACGAAGTG
CTGGAGCGCCGTCGCGGGGTCTGCCAGGACTTCGCCCACCTGATGCTCGCCTGCCTGCGCGCGCGCGGACTG
GCGGCGCGCTACGTCAGCGGCTACCTGCTGACCCGCCCGCCGCCCGGGCAGGCGCGACTGATCGGCGCCGAC
GCCTCGCATGCCTGGGTCTCGCTGTATTGCCCGGAGAACGGCTGGGTGGATTTCGACCCGACCAACGACCTG
TTGCCCGACCTGGAGCACATCACCCTGGCCTGGGGGCGGGATTTTTCCGATGTGTCGCCGCTGCGCGGGGTG
ATCCTCGGCGGTGGTAGCCATGACCCGGAGGTGCGGGTGACGGTGCTGCCGCTACAGGAAACAGCCGGCTGA
Translation:
MSAPALRSVPLQGARYQVLHDTHYRYATPVSLSRQLAHLWPRECAWQACHERELLIEPGPSRREDGHDAFGN
PLSRLAFERPHEALRVSARLQVEVFAHAPAQLAASPAWERVAAGLAFSGRALSAAELEACRYRVESPYVRIQ
RRFVEFAADCFLPGRPLLVVAAALMGKIFREFAFDAQATQVATPLDEVLERRRGVCQDFAHLMLACLRARGL
AARYVSGYLLTRPPPGQARLIGADASHAWVSLYCPENGWVDFDPTNDLLPDLEHITLAWGRDFSDVSPLRGV
ILGGGSHDPEVRVTVLPLQETAG*
AnnotationID:2363GeneID:2355
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 11:11:04
Gene Name:
Confidence Code:3
GeneProduct:putative putative cysteine protease
Cell Localization:()
Synonyms:PA4926
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:putative transglutaminase-like enzyme
Functional Category Confidence Code:5
COGs:COG1305
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58352.1| (AE016873) transglutaminase-like domain protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 297

 Score =  423 bits (1087), Expect = e-118
 Identities = 202/293 (68%), Positives = 234/293 (79%)






 
Structural Features:
COG1305, Transglutaminase-like enzymes, putative cysteine proteases 
[Amino acid transport and metabolism]
CD-Length = 319 residues,  91.5% aligned
Score =  169 bits (427), Expect = 5e-43
Identities = 98/294 (33%), Positives = 131/294 (44%), Gaps = 6/294 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4713




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21859




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35149




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2355_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2355
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3997
                           PA4926_tr
                           translation of PA4926
                           311
                           97.42
                           97.42
                           0
                           1592.0
     

     
     
120762
                           gb|AAG08311.1|AE004905_9
                           (AE004905) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           311
                           97.42
                           97.42
                           0
                           1592.0
     

     
     
120763
                           gb|AAO58352.1|
                           (AE016873) transglutaminase-like domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           311
                           64.95
                           75.24
                           14
                           1086.0
     

     
     
120764
                           dbj|BAC48244.1|
                           (AP005945) blr2979 [Bradyrhizobium japonicum USDA 110]
                           312
                           42.62
                           55.76
                           21
                           604.0
     

     
     
120765
                           emb|CAE29193.1|
                           (BX572605) Transglutaminase-like domain [Rhodopseudomonas palustris CGA009]
                           315
                           42.22
                           53.65
                           27
                           580.0
     

     






      

          
GC ORFID: 45357How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4926Glimmer Score: 

          
Start: 5060955Stop: 5060020

          
Length: 936


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4926 translation of PA4926Homolog Bit Score 617.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3448 (ORF: BLASTX 424.0), t_PA4926 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCACCCGCGCTTCGCTCCGTTCCGCTCCAGGGCGCCCGCTACCAGGTGCTGCACGACACCCATTAC 
CGCTATGCGACGCCGGTCTCGCTGTCGCGGCAACTGGCGCATCTCTGGCCACGCGAATGCGCCTGGCAGGCC 
TGTCATGAGCGGGAACTGCTGATCGAGCCGGGGCCGAGCCGGCGCGAGGATGGCCACGACGCATTCGGCAAT 
CCGCTGAGCCGGCTGGCCTTCGAGCGTCCCCACGAGGCGCTGCGGGTCAGCGCGCGGCTGCAGGTCGAGGTG 
TTCGCCCATGCGCCGGCGCAACTGGCCGCGTCGCCGGCATGGGAGCGCGTCGCCGCCGGGCTGGCATTTTCC 
GGGCGGGCGCTGTCCGCCGCCGAACTGGAAGCCTGCCGCTACCGCGTCGAGTCGCCCTATGTGCGCATCCAG 
CGGCGGTTCGTCGAGTTCGCCGCCGACTGCTTCCTGCCCGGACGGCCGTTGCTGGTGGTGGCGGCGGCACTG 
ATGGGGAAGATCTTCCGCGAGTTCGCCTTCGATGCGCAGGCCACCCAGGTGGCGACGCCGCTGGACGAAGTG 
CTGGAGCGCCGTCGCGGGGTCTGCCAGGACTTCGCCCACCTGATGCTCGCCTGCCTGCGCGCGCGCGGACTG 
GCGGCGCGCTACGTCAGCGGCTACCTGCTGACCCGCCCGCCGCCCGGGCAGGCGCGACTGATCGGCGCCGAC 
GCCTCGCATGCCTGGGTCTCGCTGTATTGCCCGGAGAACGGCTGGGTGGATTTCGACCCGACCAACGACCTG 
TTGCCCGACCTGGAGCACATCACCCTGGCCTGGGGGCGGGATTTTTCCGATGTGTCGCCGCTGCGCGGGGTG 
ATCCTCGGCGGTGGTAGCCATGACCCGGAGGTGCGGGTGACGGTGCTGCCGCTACAGGAAACAGCCGGCTGA