ViewGene
Locus Name:
GeneID:
Location:

GeneID:2341
TrivialName: PA14_14490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14490
PAO1 Ortholog Locus:PA3829
Sequence Length:924
Protein Length:307
Start: 1238079
Stop: 1239002
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07216.1|AE004800_5 (AE004800) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 305/307 (99%), Positives = 306/307 (99%)
Sequence:
ATGCAACGACTGAACGTGGAATTCCGCTCCGAGGGTGTCGCCCTGCGCGGCTGGCTGTATTTGCCGGAGGCG
CGTGCCGAGCGGCCGGCGATCGTCATGACGCACGGTTTTTCCGGGGTGAAGGAGCAGTACCTGGACCGTTAC
GCCGAGGTATTCGCCGCCGCCGGCTTCGTCGTGCTCCTCTACGATCATCCGAACTTCGGCGACAGCGACGGC
GAACCGCGTCAGGAAATCGATCCGGTGATGCAGCGCCGCGGCTATCGCGACGCGATCACTTGGTTGGGCGCC
CAGGCCCGGGTCGACGCCAGCCGCATCGGCATCTGGGGAACCAGCTACAGCGGCGGACATGTGCTGGAAGTG
GCCGCACTGGATCGGCGGGTGAAATGCGTGGTGGCGCAGGTGCCGACCGTCAGCGGCCATGCCTCGGCGTTG
CGCCGGACCCGCGCCGAGCAGTTGCCGGCATTGCTGGCAAGCTTCGACGCGGACCGCCAGCGGCGCTTCGAG
GGCTTGCCGCCAGCGCTGTTGCCGGCGGTCGCCGCGGGCCCCGACGAGCCTTGCGCGATGGCCGGCGCGGAC
GCCCACCGGTTCTTCACCGACAGCGCGGCGCTGGCGCCGAGCTGGTGCAACCGGGTGACCCTGCGTAGCGCC
GAGCTGGCGCGAGAGAACGAGCCGGGCATTCACATTGGGCGGATCAGCCCCACGCCGCTGCTGATGATCGTC
GCCGACCGGGACCTGCTTACGCCCACGGACCTTTGCCTGGAGGCCTACCAGCGGGCGTTGCCGCCCAAGCGG
CTGCTGATGCTCGCCGGCGGCCATTTCACGCCGTACATCGAGCATTTCGACGCCACCAGCCAGGCTGCGGCA
GACTGGTTCGTCCGTCATCTCGGAGAAGGCGGCGAGCAGCCAGCGACAGTCGTCGAATAA
Translation:
MQRLNVEFRSEGVALRGWLYLPEARAERPAIVMTHGFSGVKEQYLDRYAEVFAAAGFVVLLYDHPNFGDSDG
EPRQEIDPVMQRRGYRDAITWLGAQARVDASRIGIWGTSYSGGHVLEVAALDRRVKCVVAQVPTVSGHASAL
RRTRAEQLPALLASFDADRQRRFEGLPPALLPAVAAGPDEPCAMAGADAHRFFTDSAALAPSWCNRVTLRSA
ELARENEPGIHIGRISPTPLLMIVADRDLLTPTDLCLEAYQRALPPKRLLMLAGGHFTPYIEHFDATSQAAA
DWFVRHLGEGGEQPATVVE*
AnnotationID:2349GeneID:2341
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 20:08:19
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA3829
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1073,COG0412
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1073, Hydrolases of the alpha/beta superfamily 
CD-Length = 299 residues,  90.0% aligned
Score = 81.3 bits (199), Expect = 3e-16

COG0412, Dienelactone hydrolase and related enzymes 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 236 residues,  89.0% aligned
Score = 70.8 bits (173), Expect = 4e-13








   
Genomic Context:






   
Comment:


















    ReferenceID:4685




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21831




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31728




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2341_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2341
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3978
                           PA3829_tr
                           translation of PA3829
                           307
                           99.34
                           99.67
                           0
                           1595.0
     

     
     
120607
                           gb|AAG07216.1|AE004800_5
                           (AE004800) hypothetical protein PA3829 [Pseudomonas aeruginosa PAO1]
                           307
                           99.34
                           99.67
                           0
                           1595.0
     

     
     
120609
                           gb|AAP69993.1|
                           (AY227145) unknown [Comamonas testosteroni]
                           310
                           47.41
                           55.16
                           45
                           690.0
     

     
     
120608
                           emb|CAE43128.1|
                           (BX640419) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           320
                           47.18
                           58.43
                           24
                           728.0
     

     
     
120610
                           gb|AAP69992.1|
                           (AY227144) unknown [Comamonas testosteroni]
                           310
                           46.77
                           54.83
                           45
                           683.0
     

     






      

          
GC ORFID: 45343How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3829Glimmer Score: 

          
Start: 3715859Stop: 3714936

          
Length: 924


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3829 translation of PA3829Homolog Bit Score 619.0

          
Other Homologs:  t_PA3829 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACGACTGAACGTGGAATTCCGCTCCGAGGGTGTCGCCCTGCGCGGCTGGCTGTATTTGCCGGAGGCG 
CGTGCCGAGCGGCCGGCGATCGTCATGACGCACGGTTTTTCCGGGGTGAAGGAGCAGTACCTGGACCGTTAC 
GCCGAGGTATTCGCCGCCGCCGGCTTCGTCGTGCTCCTCTACGATCATCCGAACTTCGGCGACAGCGACGGC 
GAACCGCGTCAGGAAATCGATCCGGTGATGCAGCGCCGCGGCTATCGCGACGCGATCACTTGGTTGGGCGCC 
CAGGCCCGGGTCGACGCCAGCCGCATCGGCATCTGGGGAACCAGCTACAGCGGCGGACATGTGCTGGAAGTG 
GCCGCACTGGATCGGCGGGTGAAATGCGTGGTGGCGCAGGTGCCGACCGTCAGCGGCCATGCCTCGGCGTTG 
CGCCGGACCCGCGCCGAGCAGTTGCCGGCATTGCTGGCAAGCTTCGACGCGGACCGCCAGCGGCGCTTCGAG 
GGCTTGCCGCCAGCGCTGTTGCCGGCGGTCGCCGCGGGCCCCGACGAGCCTTGCGCGATGGCCGGCGCGGAC 
GCCCACCGGTTCTTCACCGACAGCGCGGCGCTGGCGCCGAGCTGGTGCAACCGGGTGACCCTGCGTAGCGCC 
GAGCTGGCGCGAGAGAACGAGCCGGGCATTCACATTGGGCGGATCAGCCCCACGCCGCTGCTGATGATCGTC 
GCCGACCGGGACCTGCTTACGCCCACGGACCTTTGCCTGGAGGCCTACCAGCGGGCGTTGCCGCCCAAGCGG 
CTGCTGATGCTCGCCGGCGGCCATTTCACGCCGTACATCGAGCATTTCGACGCCACCAGCCAGGCTGCGGCA 
GACTGGTTCGTCCGTCATCTCGGAGAAGGCGGCGAGCAGCCAGCGACAGTCGTCGAATAA