ViewGene
Locus Name:
GeneID:
Location:

GeneID:2322
TrivialName: PA14_23170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23170
PAO1 Ortholog Locus:PA3175
Sequence Length:936
Protein Length:311
Start: 2008763
Stop: 2007828
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06563.1|AE004741_8 (AE004741) probable arginase family protein [Pseudomonas aeruginosa PAO1]
Identities = 308/311 (99%), Positives = 308/311 (99%)
Sequence:
ATGTACCCCGCCCCCGACATGAGCCTCTGGCAAGGCCGGATCGATAGCCAGGAAGGCGCCGACGCGCGGCGC
TGGCACCAATGGATGCGCCCCTACGCAGACGACGCCGAAGCGGCCAGCGTGCTGCTCGGTTTCGCCAGCGAC
GAAGGCGTGCGCCGCAACCAGGGTCGCCAGGGCGCGCGCCACGGACCGCCAGCCTTGCGTCGCGCGCTGGCC
AACCTGGCCTGGCACGGCGAGCAAGCGATCTACGATGCCGGCGACATCGTCGCCGGCGACGATCTGGAAGCC
GCCCAGGAATGCTACGCGCAACGCGTCGCCGACCTGCTCGCGCGCGGCCACCGGGTGGTCGGCCTGGGCGGC
GGCCACGAAATCGCCTACGCCAGCTTCGCCGGCCTCGCCCGCCACTTGAGTCGGCATGAGCGCCTGCCGCGC
ATCGGTATCCTCAATTTCGACGCGCATTTCGACCTGCGCCACGCCGAACGGGCCAGCTCCGGCACGCCGTTC
CGCCAGATCGCCGAACTCTGCCAGGCCAGCGACTGGCCGTTCGCCTACTGCTGCCTGGGCATCAGCCGCCTG
AGCAACACCGCGGCGCTGTTCGACCAGGCCCAGCGCCTGGGTGTGCGCTACCTGCTGGACCGCCAGTTGCAG
CCTTGGAACCTGGAACGCAGCGAAGCCTTCCTCGACAGCTTCCTGCAATCCGTCGACCACCTCTACCTGACC
GTTTGCCTCGACGTGCTCCCGGCCGCCCAGGCGCCCGGCGTCAGCGCGCCCTCGGCGCACGGCGTGGAGATG
TCGGTGGTGGAGCACCTGGTCCGCCGCGCCAAGGCCAGCGGCAAGCTGCGCCTGGCCGACATCGCCGAACTC
AACCCGCAACTCGATAGCGACCAGCGCACCGCCCGGATCGCCGCGCGCCTGGTCGACAGCCTGGTCAACTGA
Translation:
MYPAPDMSLWQGRIDSQEGADARRWHQWMRPYADDAEAASVLLGFASDEGVRRNQGRQGARHGPPALRRALA
NLAWHGEQAIYDAGDIVAGDDLEAAQECYAQRVADLLARGHRVVGLGGGHEIAYASFAGLARHLSRHERLPR
IGILNFDAHFDLRHAERASSGTPFRQIAELCQASDWPFAYCCLGISRLSNTAALFDQAQRLGVRYLLDRQLQ
PWNLERSEAFLDSFLQSVDHLYLTVCLDVLPAAQAPGVSAPSAHGVEMSVVEHLVRRAKASGKLRLADIAEL
NPQLDSDQRTARIAARLVDSLVN*
AnnotationID:2330GeneID:2322
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 13:01:26
Gene Name:
Confidence Code:3
GeneProduct:putative arginase family protein
Cell Localization:()
Synonyms:hutG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:putative formiminoglutamase
Functional Category Confidence Code:5
COGs:COG0010
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD16352.1| (AL646071) PROBABLE ARGINASE PROTEIN [Ralstonia solanacearum]
          Length = 325

 Score =  338 bits (866), Expect = 3e-92
 Identities = 182/315 (57%), Positives = 221/315 (70%), Gaps = 4/315 (1%)

>gb|AAF94363.1| (AE004200) formiminoglutamase [Vibrio cholerae]
          Length = 336

 Score =  273 bits (698), Expect = 1e-72
 Identities = 155/315 (49%), Positives = 194/315 (61%), Gaps = 14/315 (4%)






 
Structural Features:
COG0010, SpeB, Arginase/agmatinase/formimionoglutamate hydrolase, 
arginase family 
[Amino acid transport and metabolism]
CD-Length = 305 residues,  98.0% aligned
Score =  200 bits (509), Expect = 2e-52
Identities = 97/308 (31%), Positives = 133/308 (43%), Gaps = 28/308 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4647




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21793




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32369




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2322_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2322
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3952
                           PA3175_tr
                           translation of PA3175
                           311
                           99.03
                           99.03
                           0
                           1603.0
     

     
     
120185
                           gb|AAG06563.1|AE004741_8
                           (AE004741) probable arginase family protein [Pseudomonas aeruginosa PAO1]
                           311
                           99.03
                           99.03
                           0
                           1603.0
     

     
     
120186
                           emb|CAD16352.1|
                           (AL646071) PROBABLE ARGINASE PROTEIN [Ralstonia solanacearum]
                           329
                           55.92
                           68.08
                           22
                           876.0
     

     
     
120189
                           emb|CAE33138.1|
                           (BX640445) probable arginase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           318
                           50.00
                           61.63
                           8
                           694.0
     

     
     
120187
                           gb|AAQ58001.1|
                           (AE016911) formimidoylglutamase [Chromobacterium violaceum ATCC 12472]
                           317
                           49.52
                           61.82
                           14
                           754.0
     

     






      

          
GC ORFID: 45324How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3175Glimmer Score: 

          
Start: 2945168Stop: 2946103

          
Length: 936


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3175 translation of PA3175Homolog Bit Score 622.0

          
Other Homologs:  t_PA3175 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACCCCGCCCCCGACATGAGCCTCTGGCAAGGCCGGATCGATAGCCAGGAAGGCGCCGACGCGCGGCGC 
TGGCACCAATGGATGCGCCCCTACGCAGACGACGCCGAAGCGGCCAGCGTGCTGCTCGGTTTCGCCAGCGAC 
GAAGGCGTGCGCCGCAACCAGGGTCGCCAGGGCGCGCGCCACGGACCGCCAGCCTTGCGTCGCGCGCTGGCC 
AACCTGGCCTGGCACGGCGAGCAAGCGATCTACGATGCCGGCGACATCGTCGCCGGCGACGATCTGGAAGCC 
GCCCAGGAATGCTACGCGCAACGCGTCGCCGACCTGCTCGCGCGCGGCCACCGGGTGGTCGGCCTGGGCGGC 
GGCCACGAAATCGCCTACGCCAGCTTCGCCGGCCTCGCCCGCCACTTGAGTCGGCATGAGCGCCTGCCGCGC 
ATCGGTATCCTCAATTTCGACGCGCATTTCGACCTGCGCCACGCCGAACGGGCCAGCTCCGGCACGCCGTTC 
CGCCAGATCGCCGAACTCTGCCAGGCCAGCGACTGGCCGTTCGCCTACTGCTGCCTGGGCATCAGCCGCCTG 
AGCAACACCGCGGCGCTGTTCGACCAGGCCCAGCGCCTGGGTGTGCGCTACCTGCTGGACCGCCAGTTGCAG 
CCTTGGAACCTGGAACGCAGCGAAGCCTTCCTCGACAGCTTCCTGCAATCCGTCGACCACCTCTACCTGACC 
GTTTGCCTCGACGTGCTCCCGGCCGCCCAGGCGCCCGGCGTCAGCGCGCCCTCGGCGCACGGCGTGGAGATG 
TCGGTGGTGGAGCACCTGGTCCGCCGCGCCAAGGCCAGCGGCAAGCTGCGCCTGGCCGACATCGCCGAACTC 
AACCCGCAACTCGATAGCGACCAGCGCACCGCCCGGATCGCCGCGCGCCTGGTCGACAGCCTGGTCAACTGA