ViewGene
Locus Name:
GeneID:
Location:

GeneID:2312
TrivialName: PA14_42790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42790
PAO1 Ortholog Locus:PA1678
Sequence Length:915
Protein Length:304
Start: 3806822
Stop: 3805908
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05067.1|AE004595_6 (AE004595) probable DNA methylase [Pseudomonas aeruginosa PAO1]
Identities = 304/304 (100%), Positives = 304/304 (100%)
Sequence:
ATGTCCGAGTCCCGTCTGCTCACCCTGCGCGACTACATCCGCTGGGCTGTCAGCCGTTTCCACGCCGCCGGC
CTGTTCTTCGGTCACGGCACCGACAATGCCTGGGACGAGGCGCGCCACCTGGTTCTGGGCTCCCTGCACCTT
CCCTGGGAAATTTCTGACAGCTACCTGGATTGTCGCCTGGAAGACGATGAACGCGCCGAGCTGGCGGAGATC
CTCCGGCGGCGCATCGAGGAACGGATTCCGGCGGCCTACCTGCTGGGCGAAGCCTGGTTCTGCGGGATTCCC
TTCAGCGTCGACGAACGCGTGCTGGTGCCGCGCTCGCCTATCGCCGAACTTATCGAACAGCGCTTCGCGCCC
TGGCTGCCGGCCGAGCCGGCGCGAATCCTCGACCTCTGCACCGGTTCCGGCTGCATTGGCATCGCCTGCGCC
TATGCGTTCGAGCAGGCGGAGGTGGTGCTCGCCGACCTGTCCTTCGATGCGCTGGAAGTGGCCAACGTCAAT
ATCGAGCGCCACGACCTCGGCGAGCGGGTCTACACCGTCCAGGGCGACGGTTTCGCCGGGCTGCCCGGCCAG
CGCTTCGACCTGATCGTGTCCAATCCGCCCTACGTGGATGCCGAGGACTTCGCCGACATGCCGGCGGAGTTC
CATCATGAGCCTGAACTCGGCCTGGCCTGCGGTGACGACGGCCTGGACCTGGTGCGACGGATGCTCGCCGAG
GCGGCCGACCACCTCAGCGAGAAAGGCCTGCTGATCGTCGAGGTAGGCAACAGCGAGGTCCATGTGCAAGCG
CTTTATCCGGAAGTGGACTTCACCTGGCTGGAGTTCGAGCACGGCGGCCACGGGGTGTTCATGCTGTCCGCC
GCGCAGTGCCGCGAGCACCGGGAACTGTTCCGTTCGCGCTTGGAAAAGTGA
Translation:
MSESRLLTLRDYIRWAVSRFHAAGLFFGHGTDNAWDEARHLVLGSLHLPWEISDSYLDCRLEDDERAELAEI
LRRRIEERIPAAYLLGEAWFCGIPFSVDERVLVPRSPIAELIEQRFAPWLPAEPARILDLCTGSGCIGIACA
YAFEQAEVVLADLSFDALEVANVNIERHDLGERVYTVQGDGFAGLPGQRFDLIVSNPPYVDAEDFADMPAEF
HHEPELGLACGDDGLDLVRRMLAEAADHLSEKGLLIVEVGNSEVHVQALYPEVDFTWLEFEHGGHGVFMLSA
AQCREHRELFRSRLEK*
AnnotationID:2320GeneID:2312
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 19:07:54
Gene Name:
Confidence Code:3
GeneProduct:putative DNA methylase
Cell Localization:()
Synonyms:PA1678
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:putative modification methylase, HemK family
Functional Category Confidence Code:5
COGs:COG2890
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67446.1|AE016372_1 (AE016780) modification methylase, HemK family [Pseudomonas putida
           KT2440]
          Length = 302

 Score =  513 bits (1321), Expect = e-145
 Identities = 245/300 (81%), Positives = 266/300 (88%)

>gb|AAO55558.1| (AE016863) modification methylase, HemK family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 302

 Score =  499 bits (1285), Expect = e-141
 Identities = 235/302 (77%), Positives = 267/302 (88%)

>dbj|BAC60466.1| (AP005080) putative adenine-specific methylase [Vibrio
           parahaemolyticus]
          Length = 310

 Score =  360 bits (925), Expect = 4e-99
 Identities = 174/299 (58%), Positives = 221/299 (73%), Gaps = 3/299 (1%)








 
Structural Features:
COG2890, HemK, Methylase of polypeptide chain release factors 
[Translation, ribosomal structure and biogenesis]
CD-Length = 280 residues, 100.0% aligned
Score =  230 bits (587), Expect = 2e-61
Identities = 123/291 (42%), Positives = 157/291 (53%), Gaps = 13/291 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4627




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21773




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37201




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2312_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2312
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3939
                           PA1678_tr
                           translation of PA1678
                           304
                           99.99
                           99.99
                           0
                           1608.0
     

     
     
120101
                           gb|AAG05067.1|AE004595_6
                           (AE004595) probable DNA methylase [Pseudomonas aeruginosa PAO1]
                           304
                           99.99
                           99.99
                           0
                           1608.0
     

     
     
120102
                           gb|AAN67446.1|AE016372_1
                           (AE016780) modification methylase, HemK family [Pseudomonas putida KT2440]
                           304
                           80.59
                           87.82
                           2
                           1320.0
     

     
     
120103
                           gb|AAO55558.1|
                           (AE016863) modification methylase, HemK family [Pseudomonas syringae pv. tomato str. DC3000]
                           304
                           77.30
                           87.82
                           2
                           1285.0
     

     
     
120106
                           emb|CAE15564.1|
                           (BX571869) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           316
                           55.69
                           67.08
                           14
                           896.0
     

     






      

          
GC ORFID: 45314How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1678Glimmer Score: 

          
Start: 1147087Stop: 1148001

          
Length: 915


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1678 translation of PA1678Homolog Bit Score 624.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene853 (ORF: BLASTX 503.0), t_PA1678 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGAGTCCCGTCTGCTCACCCTGCGCGACTACATCCGCTGGGCTGTCAGCCGTTTCCACGCCGCCGGC 
CTGTTCTTCGGTCACGGCACCGACAATGCCTGGGACGAGGCGCGCCACCTGGTTCTGGGCTCCCTGCACCTT 
CCCTGGGAAATTTCTGACAGCTACCTGGATTGTCGCCTGGAAGACGATGAACGCGCCGAGCTGGCGGAGATC 
CTCCGGCGGCGCATCGAGGAACGGATTCCGGCGGCCTACCTGCTGGGCGAAGCCTGGTTCTGCGGGATTCCC 
TTCAGCGTCGACGAACGCGTGCTGGTGCCGCGCTCGCCTATCGCCGAACTTATCGAACAGCGCTTCGCGCCC 
TGGCTGCCGGCCGAGCCGGCGCGAATCCTCGACCTCTGCACCGGTTCCGGCTGCATTGGCATCGCCTGCGCC 
TATGCGTTCGAGCAGGCGGAGGTGGTGCTCGCCGACCTGTCCTTCGATGCGCTGGAAGTGGCCAACGTCAAT 
ATCGAGCGCCACGACCTCGGCGAGCGGGTCTACACCGTCCAGGGCGACGGTTTCGCCGGGCTGCCCGGCCAG 
CGCTTCGACCTGATCGTGTCCAATCCGCCCTACGTGGATGCCGAGGACTTCGCCGACATGCCGGCGGAGTTC 
CATCATGAGCCTGAACTCGGCCTGGCCTGCGGTGACGACGGCCTGGACCTGGTGCGACGGATGCTCGCCGAG 
GCGGCCGACCACCTCAGCGAGAAAGGCCTGCTGATCGTCGAGGTAGGCAACAGCGAGGTCCATGTGCAAGCG 
CTTTATCCGGAAGTGGACTTCACCTGGCTGGAGTTCGAGCACGGCGGCCACGGGGTGTTCATGCTGTCCGCC 
GCGCAGTGCCGCGAGCACCGGGAACTGTTCCGTTCGCGCTTGGAAAAGTGA