ViewGene
Locus Name:
GeneID:
Location:

GeneID:2258
TrivialName: PA14_37310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37310
PAO1 Ortholog Locus:PA2110
Sequence Length:942
Protein Length:313
Start: 3321024
Stop: 3321965
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05498.1|AE004638_8 (AE004638) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 310/313 (99%), Positives = 311/313 (99%)
Sequence:
ATGAACGACTCCATCCACGGCGGACTGCGGGTGTGCCagaGCACCCCGCTGGTCCAGTTGCAGGATCGCGGC
CGCTTCGGCTGCCGCCATCTCGGCGTGACCCAGGGCGGCGCCCTCGACTGGCTGTCCATGGGCTGGGCCAAC
TGGCTGCTGGGCAATCCCCTGGACGCCGCGGTGATCGAGATCGCCCTCGGCGGTTTCGTCGCCGAATGCCAC
GCCGACGGCTGGCTGGCCCTGGCCGGCGGCGATCTCGGCGCGACCCTCGATGGCCAGCCGCTGCCGGCCTGG
GGCGCGTTCGCCGTGCGCGACGGCCAGCGCCTGGCCTTCGCCCACCCGCGCCAGGGCGCCCGCGCCTACCTG
GCGGCGCCCGGCGGCTTCGCCGGCGAGCGCCAGTTGGGCAGCCTGGCCACGGTGGCCCGCGAAGGCCTGGGC
GGCCCCCGCGCCGACGGCAAGGCCCTGGCCGCAGGCGACAGCCTCGGCTGGCTGGCCGATGGCGCGCGACCG
CGCGCGCTGCCCCTGCCCAGCGAACGGATCATGGACTGCACCGGCGAAGCGCGCCTGGAGCTGATCCTCGGC
GCGCAGATCGGCGACTTCCCGGCCATGAGCCTGTTCGATGCGTTCAACGGCGACTGGCAGGTGGATACCCGC
GCCGACCGCATGGGCGTACGTCTGCTCGGCCCGCGCCTGGAATGCCGGCAGCAATCGATGATCTCCGAAGGC
ATCGCCCTGGGCGCGGTGCAGGTGCCGCCGGACGGCCAGCCGATCGTCCTGCTCAACGACCGCCAGACCATC
GGCGGCTATCCCCGTCTCGGCGCCCTCGCCCCGCTGGCGCTGGCGCGCCTGGCGCAATGCCTGCCAGGCCAG
CGGGTACGGCTGCTGCCGACGGTGCAGGAGGCGGCGCACCGCGAGCATCGACGCCTGCTGGCGGCCTGGGAC
GCATAG
Translation:
MNDSIHGGLRVCQSTPLVQLQDRGRFGCRHLGVTQGGALDWLSMGWANWLLGNPLDAAVIEIALGGFVAECH
ADGWLALAGGDLGATLDGQPLPAWGAFAVRDGQRLAFAHPRQGARAYLAAPGGFAGERQLGSLATVAREGLG
GPRADGKALAAGDSLGWLADGARPRALPLPSERIMDCTGEARLELILGAQIGDFPAMSLFDAFNGDWQVDTR
ADRMGVRLLGPRLECRQQSMISEGIALGAVQVPPDGQPIVLLNDRQTIGGYPRLGALAPLALARLAQCLPGQ
RVRLLPTVQEAAHREHRRLLAAWDA*
AnnotationID:2266GeneID:2258
AnnotatorUID: danlee
Modification Date/Time: 2006-03-31 16:04:46
Gene Name:
Confidence Code:3
GeneProduct:putative allophanate hydrolase subunit 2
Cell Localization:()
Synonyms:PA2110
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1984,pfam02626
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70148.1|AE016654_5 (AE016791) urea amidolyase-related protein [Pseudomonas putida
           KT2440]
          Length = 305

 Score =  349 bits (896), Expect = 1e-95
 Identities = 183/303 (60%), Positives = 211/303 (69%), Gaps = 2/303 (0%)

>gb|AAO07236.1|AE016808_256 (AE016808) Allophanate hydrolase subunit 2 [Vibrio vulnificus
           CMCP6]
          Length = 311

 Score =  234 bits (598), Expect = 4e-61
 Identities = 129/292 (44%), Positives = 174/292 (59%), Gaps = 11/292 (3%)








 
Structural Features:
COG1984, DUR1, Allophanate hydrolase subunit 2 
[Amino acid transport and metabolism]

pfam02626, AHS2, Allophanate hydrolase subunit 2. 






   
Genomic Context:






   
Comment:


















    ReferenceID:4519




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21665




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32607




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2258_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2258
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3842
                           PA2110_tr
                           translation of PA2110
                           313
                           99.04
                           99.36
                           0
                           1631.0
     

     
     
117875
                           gb|AAG05498.1|AE004638_8
                           (AE004638) hypothetical protein PA2110 [Pseudomonas aeruginosa PAO1]
                           313
                           99.04
                           99.36
                           0
                           1631.0
     

     
     
117876
                           gb|AAN70148.1|AE016654_5
                           (AE016791) urea amidolyase-related protein [Pseudomonas putida KT2440]
                           316
                           58.54
                           67.40
                           14
                           896.0
     

     
     
3843
                           PA4509_tr
                           translation of PA4509
                           319
                           43.88
                           54.54
                           16
                           580.0
     

     
     
117881
                           gb|AAG07897.1|AE004864_9
                           (AE004864) hypothetical protein PA4509 [Pseudomonas aeruginosa PAO1]
                           319
                           43.88
                           54.54
                           16
                           580.0
     

     






      

          
GC ORFID: 45260How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2110Glimmer Score: 

          
Start: 1632890Stop: 1631949

          
Length: 942


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2110 translation of PA2110Homolog Bit Score 632.0

          
Other Homologs:  t_PA4509 (ORF: BLASTX 229.0), t_PA2110 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACTCCATCCACGGCGGACTGCGGGTGTGCCagaGCACCCCGCTGGTCCAGTTGCAGGATCGCGGC 
CGCTTCGGCTGCCGCCATCTCGGCGTGACCCAGGGCGGCGCCCTCGACTGGCTGTCCATGGGCTGGGCCAAC 
TGGCTGCTGGGCAATCCCCTGGACGCCGCGGTGATCGAGATCGCCCTCGGCGGTTTCGTCGCCGAATGCCAC 
GCCGACGGCTGGCTGGCCCTGGCCGGCGGCGATCTCGGCGCGACCCTCGATGGCCAGCCGCTGCCGGCCTGG 
GGCGCGTTCGCCGTGCGCGACGGCCAGCGCCTGGCCTTCGCCCACCCGCGCCAGGGCGCCCGCGCCTACCTG 
GCGGCGCCCGGCGGCTTCGCCGGCGAGCGCCAGTTGGGCAGCCTGGCCACGGTGGCCCGCGAAGGCCTGGGC 
GGCCCCCGCGCCGACGGCAAGGCCCTGGCCGCAGGCGACAGCCTCGGCTGGCTGGCCGATGGCGCGCGACCG 
CGCGCGCTGCCCCTGCCCAGCGAACGGATCATGGACTGCACCGGCGAAGCGCGCCTGGAGCTGATCCTCGGC 
GCGCAGATCGGCGACTTCCCGGCCATGAGCCTGTTCGATGCGTTCAACGGCGACTGGCAGGTGGATACCCGC 
GCCGACCGCATGGGCGTACGTCTGCTCGGCCCGCGCCTGGAATGCCGGCAGCAATCGATGATCTCCGAAGGC 
ATCGCCCTGGGCGCGGTGCAGGTGCCGCCGGACGGCCAGCCGATCGTCCTGCTCAACGACCGCCAGACCATC 
GGCGGCTATCCCCGTCTCGGCGCCCTCGCCCCGCTGGCGCTGGCGCGCCTGGCGCAATGCCTGCCAGGCCAG 
CGGGTACGGCTGCTGCCGACGGTGCAGGAGGCGGCGCACCGCGAGCATCGACGCCTGCTGGCGGCCTGGGAC 
GCATAG