ViewGene
Locus Name:
GeneID:
Location:

GeneID:2249
TrivialName: PA14_18720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18720
PAO1 Ortholog Locus:PA3526
Sequence Length:966
Protein Length:321
Start: 1611174
Stop: 1612139
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06914.1|AE004773_3 (AE004773) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 320/321 (99%), Positives = 321/321 (100%)
Sequence:
GTGCAGCCGCGCCTTCTTCTATTGCCTTTCCTGCTCAGCAGCCTGCCGGCACTGGCGGTGACCTTCCAGACG
CGGCTGGAGAGCGTCGAGTGGAAGGTCGAAGGCGACCAGTTCGAATGCCGCCTGTCGCAGCCGGTGGCGAAT
TTCGGGGTCGGCGAGTTCGTCCGGCGTGCCGGCGAGCAGGCGACCTTCCGCCTGAAGCCCGAGGCCCAGTGG
CTGGGGCGCGGGTCGGCGACCCTGCTGGCTGCCGCGCCGCCCTGGCGACCGGGACAGGGCGACATCAACCTT
GGCCAGGTCAGCATCGGCAGCGGCGAGGTGCCGTTCAACAGCAGCCAGCAACAGGCCGGTCGGTTGCTCACC
GGCCTGCTCGAGGGGCGCAGCCCGCTGGTCCGCCATCGCACCTGGCAGGGCGATCGCCTGGAGGTGCGCCTG
CTGCCGGCGCGCTTCGCCAGCGTCTACAGCCAGTACCAGGCCTGCATCGCCAAGCTGCTGCCGGTGAACTTC
GAGCAGGTCAAGCTGGCCCAGGTCGGCTTCCCCGACGGCGGCACGGCGCTGAACGACGTGGCGCGAGCCAAG
CTGGACATCATCCTGCAACTGCTCAAGGCCGATCCGAGCATCAACCGGATCGAACTCGACGGGCACTCCGAC
AACAGCGGCAACCGCCTGACCAACCGCGACCTGTCGCGCCGCCGCGCGCTGGCGGTGCAGGAGTACCTGAAG
AGCAACGGGGTGCCGGAAAGCCAGATCAACGTGCGCTTCTACGGCGAGCGCTACCCGCTGGTGGCCAACAAC
AGCGCCGCCAACCGTGCGCGCAACCGCCGGGTCACCGTGCACCTGTCGCGCGAGGCGGTGGTCGAGCCGGCG
ACGGAAGCGCCGAAGGCCGAGGACAAGCCGGCGCCGCCCGCGGCAGAACCTGCCGCACCGAAGCCTCCGGCC
GCCTCGCTTCAGGGAAAACCCACGGTTTGA
Translation:
MQPRLLLLPFLLSSLPALAVTFQTRLESVEWKVEGDQFECRLSQPVANFGVGEFVRRAGEQATFRLKPEAQW
LGRGSATLLAAAPPWRPGQGDINLGQVSIGSGEVPFNSSQQQAGRLLTGLLEGRSPLVRHRTWQGDRLEVRL
LPARFASVYSQYQACIAKLLPVNFEQVKLAQVGFPDGGTALNDVARAKLDIILQLLKADPSINRIELDGHSD
NSGNRLTNRDLSRRRALAVQEYLKSNGVPESQINVRFYGERYPLVANNSAANRARNRRVTVHLSREAVVEPA
TEAPKAEDKPAPPAAEPAAPKPPAASLQGKPTV*
AnnotationID:2257GeneID:2249
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 16:04:22
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein precursor, OmpA family
Cell Localization:()
Synonyms:motY
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative sodium-type flagellar protein MotY
Functional Category Confidence Code:5
COGs:pfam00691,COG2885
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57612.1| (AE016870) sodium-type flagellar protein MotY, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 301

 Score =  401 bits (1030), Expect = e-111
 Identities = 195/307 (63%), Positives = 242/307 (78%), Gaps = 10/307 (3%)

>gb|AAN66712.1|AE016299_8 (AE016778) outer membrane protein, OmpA family [Pseudomonas putida
           KT2440]
          Length = 317

 Score =  373 bits (958), Expect = e-103
 Identities = 188/313 (60%), Positives = 234/313 (74%), Gaps = 3/313 (0%)

>gb|AAF94169.1| (AE004182) sodium-type flagellar protein MotY [Vibrio cholerae]
          Length = 294

 Score =  133 bits (334), Expect = 2e-30
 Identities = 83/274 (30%), Positives = 142/274 (51%), Gaps = 7/274 (2%)






 
Structural Features:
pfam00691, OmpA, OmpA family. The Pfam entry also includes 
MotB and related proteins.
CD-Length = 96 residues,  99.0% aligned
Score = 76.8 bits (189), Expect = 3e-15
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

COG2885, OmpA, Outer membrane protein and related 
peptidoglycan-associated (lipo)proteins 
[Cell envelope biogenesis, outer membrane]
CD-Length = 190 residues,  86.8% aligned
Score =  108 bits (271), Expect = 7e-25
Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 20/185 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14547




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21647




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32040




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2249_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2249
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3811
                           PA3526_tr
                           translation of PA3526
                           321
                           99.68
                           99.99
                           0
                           1635.0
     

     
     
117166
                           gb|AAG06914.1|AE004773_3
                           (AE004773) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           321
                           99.37
                           99.99
                           0
                           1632.0
     

     
     
117167
                           gb|AAO57612.1|
                           (AE016870) sodium-type flagellar protein MotY, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           321
                           60.43
                           75.38
                           20
                           1028.0
     

     
     
117168
                           gb|AAN66712.1|AE016299_8
                           (AE016778) outer membrane protein, OmpA family [Pseudomonas putida KT2440]
                           328
                           57.62
                           71.34
                           18
                           965.0
     

     






      

          
GC ORFID: 45251How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3526Glimmer Score: 

          
Start: 3342760Stop: 3341795

          
Length: 966


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3526 translation of PA3526Homolog Bit Score 634.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6266 (ORF: BLASTX 403.0), t_PA3526 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCAGCCGCGCCTTCTTCTATTGCCTTTCCTGCTCAGCAGCCTGCCGGCACTGGCGGTGACCTTCCAGACG 
CGGCTGGAGAGCGTCGAGTGGAAGGTCGAAGGCGACCAGTTCGAATGCCGCCTGTCGCAGCCGGTGGCGAAT 
TTCGGGGTCGGCGAGTTCGTCCGGCGTGCCGGCGAGCAGGCGACCTTCCGCCTGAAGCCCGAGGCCCAGTGG 
CTGGGGCGCGGGTCGGCGACCCTGCTGGCTGCCGCGCCGCCCTGGCGACCGGGACAGGGCGACATCAACCTT 
GGCCAGGTCAGCATCGGCAGCGGCGAGGTGCCGTTCAACAGCAGCCAGCAACAGGCCGGTCGGTTGCTCACC 
GGCCTGCTCGAGGGGCGCAGCCCGCTGGTCCGCCATCGCACCTGGCAGGGCGATCGCCTGGAGGTGCGCCTG 
CTGCCGGCGCGCTTCGCCAGCGTCTACAGCCAGTACCAGGCCTGCATCGCCAAGCTGCTGCCGGTGAACTTC 
GAGCAGGTCAAGCTGGCCCAGGTCGGCTTCCCCGACGGCGGCACGGCGCTGAACGACGTGGCGCGAGCCAAG 
CTGGACATCATCCTGCAACTGCTCAAGGCCGATCCGAGCATCAACCGGATCGAACTCGACGGGCACTCCGAC 
AACAGCGGCAACCGCCTGACCAACCGCGACCTGTCGCGCCGCCGCGCGCTGGCGGTGCAGGAGTACCTGAAG 
AGCAACGGGGTGCCGGAAAGCCAGATCAACGTGCGCTTCTACGGCGAGCGCTACCCGCTGGTGGCCAACAAC 
AGCGCCGCCAACCGTGCGCGCAACCGCCGGGTCACCGTGCACCTGTCGCGCGAGGCGGTGGTCGAGCCGGCG 
ACGGAAGCGCCGAAGGCCGAGGACAAGCCGGCGCCGCCCGCGGCAGAACCTGCCGCACCGAAGCCTCCGGCC 
GCCTCGCTTCAGGGAAAACCCACGGTTTGA