ViewGene
Locus Name:
GeneID:
Location:

GeneID:2210
TrivialName: PA14_61550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61550
PAO1 Ortholog Locus:PA4653
Sequence Length:948
Protein Length:315
Start: 5491878
Stop: 5492825
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08040.1|AE004879_6 (AE004879) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 315/315 (100%), Positives = 315/315 (100%)
Sequence:
ATGAGCCGCCACTCCACGTCCGCCTGCCTGCTCGGCTTCGCTACGCTCTGCGCCAGCCCGTTGCTGCTCGCC
GCCTGCACCACCAGCTCCGGCACCGGCAATTTCGGCAGCCTGAGCTCGTTCACCGTGGCCAGCACCGCACAG
ACCATCACCGGCACCACCGGCTTCAAGTGCACCGGCAGCCTGTTGTCGATCCTCAGCACCAACACCATCGAC
GCGACCATCGCCAGCACCGCCAATCCGCTGGGCACCACGCCGCGGCTGTACAATGCCGCCAGCGGCACCTAC
CTGCCCTACAGCATCTGCAAGGACAACGGCTGCGGCACCGTCTACAACGTCGGCTCGACGGTACGCTGGAGC
AGCACCACCTTCCTCGGCATCCTCGGCCTGTTCAACGCCACCGACGGCAGCCTGCCGCTGTACCTGCGCACC
GCCACCGGGGTGACCCTGCCGGCCGGCACCTATACCGATACCATCGGCCTGAACTGGGCCTGGCACCTGTGC
GCGGCGGGCATCGGCCCAGTCTGCGTATACGACGACGGCACCGCCAGCAGCAGCGTCAACGTTACCCTGACG
GTGCTCAAGGACTGCTTCATCGACAGCGCTCCGGACCTCAGCTTCGGCAGCGCCGCGCTGGTCTCGGCCTTC
ACCGCGGTGAACCAGAACATTGGCGTGCGCTGCACCCTGAACGCCACCTATACCATCGGCTTCGACAACGGC
AACAACTTCAGCGGCGGCTGGCGGCGAATGCTCAGCGGCGCCAACGCGATCCAGTACAACCTCTACAAACCG
GGCGACTCGACGGTCTGGACCACCAGCAACACCCAGGCAGGCACCGGTAGCGGCGCAGCGCAGAACGTGCCG
TACCGGGCCATCGTCAACCCGGCACAGGGCAACGTCCCCGCCGGTACCTACAGCGATACCGTGCGGGTCATC
CTCACCTACTGA
Translation:
MSRHSTSACLLGFATLCASPLLLAACTTSSGTGNFGSLSSFTVASTAQTITGTTGFKCTGSLLSILSTNTID
ATIASTANPLGTTPRLYNAASGTYLPYSICKDNGCGTVYNVGSTVRWSSTTFLGILGLFNATDGSLPLYLRT
ATGVTLPAGTYTDTIGLNWAWHLCAAGIGPVCVYDDGTASSSVNVTLTVLKDCFIDSAPDLSFGSAALVSAF
TAVNQNIGVRCTLNATYTIGFDNGNNFSGGWRRMLSGANAIQYNLYKPGDSTVWTTSNTQAGTGSGAAQNVP
YRAIVNPAQGNVPAGTYSDTVRVILTY*
AnnotationID:2218GeneID:2210
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 06:06:38
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4653
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC90515.1| (AJ414150) putative membrane protein [Yersinia pestis CO92]
          Length = 329

 Score =  221 bits (563), Expect = 4e-57
 Identities = 124/299 (41%), Positives = 175/299 (58%), Gaps = 14/299 (4%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4423




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21569




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37589




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2210_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2210
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3756
                           PA4653_tr
                           translation of PA4653
                           315
                           99.99
                           99.99
                           0
                           1650.0
     

     
     
115809
                           gb|AAG08040.1|AE004879_6
                           (AE004879) hypothetical protein PA4653 [Pseudomonas aeruginosa PAO1]
                           315
                           99.99
                           99.99
                           0
                           1650.0
     

     
     
115810
                           gb|AAM85424.1|AE013789_1
                           (AE013789) hypothetical [Yersinia pestis KIM]
                           338
                           38.46
                           54.73
                           32
                           574.0
     

     
     
115811
                           emb|CAC90515.1|
                           (AJ414150) putative membrane protein [Yersinia pestis CO92]
                           338
                           38.46
                           54.73
                           32
                           574.0
     

     






      

          
GC ORFID: 45212How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4653Glimmer Score: 

          
Start: 4755558Stop: 4756505

          
Length: 948


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4653 translation of PA4653Homolog Bit Score 640.0

          
Other Homologs:  t_PA4653 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGCCACTCCACGTCCGCCTGCCTGCTCGGCTTCGCTACGCTCTGCGCCAGCCCGTTGCTGCTCGCC 
GCCTGCACCACCAGCTCCGGCACCGGCAATTTCGGCAGCCTGAGCTCGTTCACCGTGGCCAGCACCGCACAG 
ACCATCACCGGCACCACCGGCTTCAAGTGCACCGGCAGCCTGTTGTCGATCCTCAGCACCAACACCATCGAC 
GCGACCATCGCCAGCACCGCCAATCCGCTGGGCACCACGCCGCGGCTGTACAATGCCGCCAGCGGCACCTAC 
CTGCCCTACAGCATCTGCAAGGACAACGGCTGCGGCACCGTCTACAACGTCGGCTCGACGGTACGCTGGAGC 
AGCACCACCTTCCTCGGCATCCTCGGCCTGTTCAACGCCACCGACGGCAGCCTGCCGCTGTACCTGCGCACC 
GCCACCGGGGTGACCCTGCCGGCCGGCACCTATACCGATACCATCGGCCTGAACTGGGCCTGGCACCTGTGC 
GCGGCGGGCATCGGCCCAGTCTGCGTATACGACGACGGCACCGCCAGCAGCAGCGTCAACGTTACCCTGACG 
GTGCTCAAGGACTGCTTCATCGACAGCGCTCCGGACCTCAGCTTCGGCAGCGCCGCGCTGGTCTCGGCCTTC 
ACCGCGGTGAACCAGAACATTGGCGTGCGCTGCACCCTGAACGCCACCTATACCATCGGCTTCGACAACGGC 
AACAACTTCAGCGGCGGCTGGCGGCGAATGCTCAGCGGCGCCAACGCGATCCAGTACAACCTCTACAAACCG 
GGCGACTCGACGGTCTGGACCACCAGCAACACCCAGGCAGGCACCGGTAGCGGCGCAGCGCAGAACGTGCCG 
TACCGGGCCATCGTCAACCCGGCACAGGGCAACGTCCCCGCCGGTACCTACAGCGATACCGTGCGGGTCATC 
CTCACCTACTGA