ViewGene
Locus Name:
GeneID:
Location:

GeneID:2205
TrivialName: PA14_51080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51080
PAO1 Ortholog Locus:PA1024
Sequence Length:987
Protein Length:328
Start: 4540049
Stop: 4539063
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04413.1|AE004534_11 (AE004534) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 327/328 (99%), Positives = 327/328 (99%)
Sequence:
ATGGGCGTGTTCAGGACCCGTTTCACCGAGACCTTCGGCGTCGAACACCCGATCATGCAGGGCGGTATGCAG
TGGGTCGGCCGTGCCGAGATGGCTGCGGCGGTGGCCAACGCCGGTGGCCTGGCGACGCTGTCGGCGTTGACC
CAGCCGAGCCCGGAGGCACTGGCTGCGGAGATTGCACGCTGCCGCGAGCTGACCGATCGGCCGTTCGGGGTC
AACCTGACCTTGCTGCCGACGCAGAAGCCGGTGCCCTATGCCGAATATCGTGCAGCCATCATCGAGGCGGGA
ATCCCCGTCGTCGAAACCGCCGGCAACGACCCCGGCGAGCACATCGCCGAATTCCGTCGACACGGCGTCAAG
GTGATCCACAAGTGCACCGCCGTGCGCCATGCGCTCAAGGCCGAGCGACTCGGTGTGGACGCCGTCTCCATC
GACGGCTTCGAGTGTGCCGGCCACCCGGGCGAGGACGACATCCCCGGCCTGGTGTTGCTGCCGGCCGCGGCC
AACCGGCTACGCGTGCCGATCATCGCCTCCGGCGGTTTCGCCGATGGACGTGGCCTGGTCGCGGCGCTGGCG
CTGGGTGCCGACGCGATCAACATGGGCACGCGCTTCCTGGCCACTCGCGAATGTCCGATACACCCTGCGGTG
AAGGCGGCGATCCGTGCGGCCGACGAGCGTTCCACCGACCTGATCATGCGTTCCCTGCGCAATACCGCGCGG
GTGGCGCGCAACGCGATCAGCCAGGAAGTACTGGCGATCGAGGCACGCGGCGGCGCCGGCTACGCCGATATC
GCCGCGCTGGTCAGCGGCCAGCGCGGTCGCCAGGTGTACCAGCAGGGCGATACCGACCTGGGGATCTGGTCG
GCCGGCATGGTCCAGGGCCTGATCGACGACGAACCGGCCTGCGCCGAGTTGCTCAGGGACATCGTCGAGCAG
GCGCGCCAACTGGTGCGTCAACGCCTGGAGGGCATGCTCGCCGGGGTCTGA
Translation:
MGVFRTRFTETFGVEHPIMQGGMQWVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGV
NLTLLPTQKPVPYAEYRAAIIEAGIPVVETAGNDPGEHIAEFRRHGVKVIHKCTAVRHALKAERLGVDAVSI
DGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALALGADAINMGTRFLATRECPIHPAV
KAAIRAADERSTDLIMRSLRNTARVARNAISQEVLAIEARGGAGYADIAALVSGQRGRQVYQQGDTDLGIWS
AGMVQGLIDDEPACAELLRDIVEQARQLVRQRLEGMLAGV*
AnnotationID:2213GeneID:2205
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 17:05:15
Gene Name:
Confidence Code:3
GeneProduct:Putative dioxygenase
Cell Localization:()
Synonyms:PA1024
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2070, pfam03060
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2070, Dioxygenases related to 2-nitropropane dioxygenase. Score: 242, 6e-65
pfam03060, NPD, 2-nitropropane dioxygenase. Score: 192, 6e-50






   
Genomic Context:






   
Comment:


















    ReferenceID:4413




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21559




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2205
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3751
                           PA1024_tr
                           translation of PA1024
                           328
                           99.69
                           99.69
                           0
                           1652.0
     

     
     
115750
                           gb|AAG04413.1|AE004534_11
                           (AE004534) hypothetical protein PA1024 [Pseudomonas aeruginosa PAO1]
                           328
                           99.69
                           99.69
                           0
                           1652.0
     

     
     
115751
                           emb|CAE27382.1|
                           (BX572599) possible 2-nitropropane dioxygenase [Rhodopseudomonas palustris CGA009]
                           334
                           66.76
                           81.43
                           8
                           1194.0
     

     
     
115752
                           dbj|BAC48408.1|
                           (AP005946) bll3143 [Bradyrhizobium japonicum USDA 110]
                           334
                           66.76
                           82.03
                           9
                           1187.0
     

     
     
115753
                           gb|AAK24952.1|
                           (AE005962) conserved hypothetical protein [Caulobacter crescentus CB15]
                           328
                           66.76
                           79.26
                           3
                           1129.0
     

     






      

          
GC ORFID: 45207How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1024Glimmer Score: 

          
Start: 413859Stop: 414845

          
Length: 987


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1024 translation of PA1024Homolog Bit Score 640.0

          
Other Homologs:  t_PA1024 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCGTGTTCAGGACCCGTTTCACCGAGACCTTCGGCGTCGAACACCCGATCATGCAGGGCGGTATGCAG 
TGGGTCGGCCGTGCCGAGATGGCTGCGGCGGTGGCCAACGCCGGTGGCCTGGCGACGCTGTCGGCGTTGACC 
CAGCCGAGCCCGGAGGCACTGGCTGCGGAGATTGCACGCTGCCGCGAGCTGACCGATCGGCCGTTCGGGGTC 
AACCTGACCTTGCTGCCGACGCAGAAGCCGGTGCCCTATGCCGAATATCGTGCAGCCATCATCGAGGCGGGA 
ATCCCCGTCGTCGAAACCGCCGGCAACGACCCCGGCGAGCACATCGCCGAATTCCGTCGACACGGCGTCAAG 
GTGATCCACAAGTGCACCGCCGTGCGCCATGCGCTCAAGGCCGAGCGACTCGGTGTGGACGCCGTCTCCATC 
GACGGCTTCGAGTGTGCCGGCCACCCGGGCGAGGACGACATCCCCGGCCTGGTGTTGCTGCCGGCCGCGGCC 
AACCGGCTACGCGTGCCGATCATCGCCTCCGGCGGTTTCGCCGATGGACGTGGCCTGGTCGCGGCGCTGGCG 
CTGGGTGCCGACGCGATCAACATGGGCACGCGCTTCCTGGCCACTCGCGAATGTCCGATACACCCTGCGGTG 
AAGGCGGCGATCCGTGCGGCCGACGAGCGTTCCACCGACCTGATCATGCGTTCCCTGCGCAATACCGCGCGG 
GTGGCGCGCAACGCGATCAGCCAGGAAGTACTGGCGATCGAGGCACGCGGCGGCGCCGGCTACGCCGATATC 
GCCGCGCTGGTCAGCGGCCAGCGCGGTCGCCAGGTGTACCAGCAGGGCGATACCGACCTGGGGATCTGGTCG 
GCCGGCATGGTCCAGGGCCTGATCGACGACGAACCGGCCTGCGCCGAGTTGCTCAGGGACATCGTCGAGCAG 
GCGCGCCAACTGGTGCGTCAACGCCTGGAGGGCATGCTCGCCGGGGTCTGA