ViewGene
Locus Name:
GeneID:
Location:

GeneID:2158
TrivialName: PA14_44360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44360
PAO1 Ortholog Locus:PA1555
Sequence Length:927
Protein Length:308
Start: 3949479
Stop: 3950405
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04944.1|AE004583_9 (AE004583) probable cytochrome c [Pseudomonas aeruginosa PAO1]
Identities = 308/308 (100%), Positives = 308/308 (100%)
Sequence:
ATGACCACCTTCTGGAGTCTGTACATCACAGCTCTTACCGTCGGTACCTTGATCGCCCTGCTCTGGCTGGTC
TTCGCCACCCGCAAGGGCGAGGCCAAGGGTACTACCGAAAAGACCATGGGCCACTCCTACGACGGCATCGAG
GAGTATGACAACCCGCTGCCGAAGTGGTGGTTCATGCTGTATATCGGCACCATCGTCTTCTCCGTCGGCTAC
CTGGTCCTGTACCCGGGCCTGGGTAACTGGAAAGGCGTGCTGCCGGGCTACGAGGGCGGCTGGACCCAGGAC
AAGCAGTGGGAACGCGAGATGAACATCGCCCAGGAGAAGTACGGGCCGATCTTCGCCAAGTACGCCGCCATG
CCCATCGAGGAAGTGGCCAAGGACGAGCACGCCATGAAGATGGGCAGCCGCATGTTCGCCACCTACTGCTCG
ATCTGCCACGGTTCCGACGCCAAGGGCGCCCTCGGCTTCCCCAACCTGGCCGACAACGAGTGGCGCTGGGGC
GGTGACCCGCAGAGCATCGAGACCACCATCCTCGGCGGTCGCCACGCGATCATGGCGGCCTGGGGCGACATC
CTCGGCGAAGACGGGGTGAAGAACGTCGCCGCCTACGTCCGCACCGAACTCGCCGGGCTGAAGCTGCCGGAA
GGCACCAAGGCCGACGTCGAGGCCGGCAAGCAGATCTTCTCGGTCAACTGCGTCGCCTGCCACGGCCCGGAA
GGCAAGGGTACCGCCCTGGTCGGCGCGCCGAACCTGACCAACCCCGGCGCGTTCATCTACGGCTCCAGCTAC
GCCCAGCTCCAACAAACCATCCGCCATGGCCGCCAGGGCCAGATGCCGGCCCAGGAGCCCTACCTGGGCAAG
GAAAAGGTGCACATCCTGGCCGCCTACATCTACAACCTGTCGCACAACCAGGGCAGCAACTGA
Translation:
MTTFWSLYITALTVGTLIALLWLVFATRKGEAKGTTEKTMGHSYDGIEEYDNPLPKWWFMLYIGTIVFSVGY
LVLYPGLGNWKGVLPGYEGGWTQDKQWEREMNIAQEKYGPIFAKYAAMPIEEVAKDEHAMKMGSRMFATYCS
ICHGSDAKGALGFPNLADNEWRWGGDPQSIETTILGGRHAIMAAWGDILGEDGVKNVAAYVRTELAGLKLPE
GTKADVEAGKQIFSVNCVACHGPEGKGTALVGAPNLTNPGAFIYGSSYAQLQQTIRHGRQGQMPAQEPYLGK
EKVHILAAYIYNLSHNQGSN*
AnnotationID:2166GeneID:2158
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 14:02:38
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome c oxidase, cbb3-type, subunit III
Cell Localization:()
Synonyms:PA1555, fixP, ccoP
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2010
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69833.1|AE016622_10 (AE016790) cytochrome c oxidase, cbb3-type, subunit III
           [Pseudomonas putida KT2440]
          Length = 313

 Score =  479 bits (1232), Expect = e-134
 Identities = 209/304 (68%), Positives = 261/304 (85%)

>gb|AAM76067.1|AF521004_3 (AF521004) cytochrome c oxidase diheme subunit [Pseudomonas
           stutzeri]
          Length = 305

 Score =  457 bits (1175), Expect = e-128
 Identities = 197/302 (65%), Positives = 258/302 (85%), Gaps = 2/302 (0%)

>gb|AAO55519.1| (AE016862) cytochrome c oxidase, cbb3-type, subunit III
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 325

 Score =  427 bits (1098), Expect = e-119
 Identities = 190/319 (59%), Positives = 254/319 (79%), Gaps = 14/319 (4%)






 
Structural Features:
COG2010, CccA, Cytochrome c, mono- and diheme variants 
[Energy production and conversion]
CD-Length = 150 residues,  98.7% aligned
Score = 77.3 bits (189), Expect = 2e-15
Identities = 42/157 (26%), Positives = 57/157 (36%), Gaps = 14/157 (8%)






   
Genomic Context:






   
Comment:
other possible gene name: fixP


















    ReferenceID:4319




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21465




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37240




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2158_cdd.html


    		




 
URL:

















    ReferenceID:37920




  
Author/Investigator(s):
        Thony-Meyer L, Beck C, Preisig O, Hennecke H.





  
Title:
        The ccoNOQP gene cluster codes for a cb-type cytochrome oxidase that functions in aerobic respiration of Rhodobacter capsulatus.




  
PubMed:
        7891558


MedLine:
        




    
Source:
Mol Microbiol. 1994 Nov;14(4):705-16.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7891558

















    ReferenceID:37925




  
Author/Investigator(s):
        Preisig O, Anthamatten D, Hennecke H.





  
Title:
        Genes for a microaerobically induced oxidase complex in Bradyrhizobium japonicum are essential for a nitrogen-fixing endosymbiosis.




  
PubMed:
        8386371


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3309-13.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8386371









           
Homologs By Global Alignment 

           

       



     
Gene ID:2158
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3694
                           PA1555_tr
                           translation of PA1555
                           308
                           99.99
                           99.99
                           0
                           1669.0
     

     
     
114093
                           gb|AAG04944.1|AE004583_9
                           (AE004583) probable cytochrome c [Pseudomonas aeruginosa PAO1]
                           308
                           99.99
                           99.99
                           0
                           1669.0
     

     
     
3695
                           PA1552_tr
                           translation of PA1552
                           318
                           70.75
                           85.22
                           10
                           1286.0
     

     
     
114094
                           gb|AAG04941.1|AE004583_6
                           (AE004583) probable cytochrome c [Pseudomonas aeruginosa PAO1]
                           318
                           70.75
                           85.22
                           10
                           1286.0
     

     
     
114095
                           gb|AAN69833.1|AE016622_10
                           (AE016790) cytochrome c oxidase, cbb3-type, subunit III [Pseudomonas putida KT2440]
                           313
                           66.77
                           83.70
                           5
                           1231.0
     

     






      

          
GC ORFID: 45160How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1555Glimmer Score: 

          
Start: 1004430Stop: 1003504

          
Length: 927


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1555 translation of PA1555Homolog Bit Score 647.0

          
Other Homologs:  t_PA1552 (ORF: BLASTX 498.0), psyr_15may02_Scaffold8_revised_gene7528 (ORF: BLASTX 432.0), t_PA1555 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCACCTTCTGGAGTCTGTACATCACAGCTCTTACCGTCGGTACCTTGATCGCCCTGCTCTGGCTGGTC 
TTCGCCACCCGCAAGGGCGAGGCCAAGGGTACTACCGAAAAGACCATGGGCCACTCCTACGACGGCATCGAG 
GAGTATGACAACCCGCTGCCGAAGTGGTGGTTCATGCTGTATATCGGCACCATCGTCTTCTCCGTCGGCTAC 
CTGGTCCTGTACCCGGGCCTGGGTAACTGGAAAGGCGTGCTGCCGGGCTACGAGGGCGGCTGGACCCAGGAC 
AAGCAGTGGGAACGCGAGATGAACATCGCCCAGGAGAAGTACGGGCCGATCTTCGCCAAGTACGCCGCCATG 
CCCATCGAGGAAGTGGCCAAGGACGAGCACGCCATGAAGATGGGCAGCCGCATGTTCGCCACCTACTGCTCG 
ATCTGCCACGGTTCCGACGCCAAGGGCGCCCTCGGCTTCCCCAACCTGGCCGACAACGAGTGGCGCTGGGGC 
GGTGACCCGCAGAGCATCGAGACCACCATCCTCGGCGGTCGCCACGCGATCATGGCGGCCTGGGGCGACATC 
CTCGGCGAAGACGGGGTGAAGAACGTCGCCGCCTACGTCCGCACCGAACTCGCCGGGCTGAAGCTGCCGGAA 
GGCACCAAGGCCGACGTCGAGGCCGGCAAGCAGATCTTCTCGGTCAACTGCGTCGCCTGCCACGGCCCGGAA 
GGCAAGGGTACCGCCCTGGTCGGCGCGCCGAACCTGACCAACCCCGGCGCGTTCATCTACGGCTCCAGCTAC 
GCCCAGCTCCAACAAACCATCCGCCATGGCCGCCAGGGCCAGATGCCGGCCCAGGAGCCCTACCTGGGCAAG 
GAAAAGGTGCACATCCTGGCCGCCTACATCTACAACCTGTCGCACAACCAGGGCAGCAACTGA