ViewGene
Locus Name:
GeneID:
Location:

GeneID:2136
TrivialName: PA14_08150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08150
PAO1 Ortholog Locus:PA0628
Sequence Length:990
Protein Length:329
Start: 699647
Stop: 700636
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04017.1|AE004498_12 (AE004498) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 325/329 (98%), Positives = 327/329 (99%)
Sequence:
GTGCAACCGAGTTTCCGTATCGTTGCCGACGGCACCGACGTCACCCAGCGGCTGAATGACCGCCTGCTCAAG
CTGACCTTGCTGGACAAGCCGGGCATGGAGTCCGACAGCCTGACCTTGAGGCTCGACGATCGCGATGGACAG
GTGGCCTTACCCAGGCGCGGTGCGGTGCTGGAGGTTCATCTCGGCTATGCCGGCGAGCCACTGATGCGCATG
GGGCGCTTTACCGTGGACACCCTGCAGTGGGCTGGTCCGCCGGACTGCCTGACCGTCACTGCCAAGGCCGGC
GACATGCGCGGCAGTGGCAAGACGATACGCAGCGGCGGTTGGGAGGGCACTACCCTGGCTCAGGTCTGCCGC
GATGTTGGCGCACGCAACGGCTGGCGCGTGGAGTGTCCGTTGCAGGTGGCGATCGCCCGGGTCGACCAGGTC
AATGAGTCCGACTACCACTTCGTCACCCGTCTGGCGCGCCAGTACGACTGCACCGCCAAGCTGGCCGAGGGC
ATGCTCATGGTGCTGCCGCGACAGAGCGGGCAGAGCGCCACGGGGCGTCGGATCGAACCTTTGGTGTTGGGA
CGTGCTGACGTCGGCAGCTTCGACGTTACCTACGACGACCGCAGCCTGATGAGAACGGTGAAGACTCGCTAC
CAATTGCCCGGCAGCGGCGAGGTCAAGAGCGTCGAGCTGAAGAACCCGAAGGCACCGGCTACGGCTACGGGC
GAGCATGTCGACCGGCATCTCTATGCCAGCCGTGGAGAGGCCGAGCAGGCGGCGAAGGCTCGCCTGGCGAGC
TTCAGCCGCTCCAGTGCCAGTGTGCGCCTGGAGTTGCCGGGGCGTGGCGACCTGTTCGCCGAGCGCAGCCTG
CTGCTCCAAGGCTTCAAGGCGGGAATCGACGGCGAGTTCCTGATCGACTCGGTGGAGCACACCTACAGCTCC
AGCGGATGGACCACTGTCGTGCAATGCAACGGCGGCCGAGGCGGCAAGGGGTGA
Translation:
MQPSFRIVADGTDVTQRLNDRLLKLTLLDKPGMESDSLTLRLDDRDGQVALPRRGAVLEVHLGYAGEPLMRM
GRFTVDTLQWAGPPDCLTVTAKAGDMRGSGKTIRSGGWEGTTLAQVCRDVGARNGWRVECPLQVAIARVDQV
NESDYHFVTRLARQYDCTAKLAEGMLMVLPRQSGQSATGRRIEPLVLGRADVGSFDVTYDDRSLMRTVKTRY
QLPGSGEVKSVELKNPKAPATATGEHVDRHLYASRGEAEQAAKARLASFSRSSASVRLELPGRGDLFAERSL
LLQGFKAGIDGEFLIDSVEHTYSSSGWTTVVQCNGGRGGKG*
AnnotationID:2144GeneID:2136
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:34
Gene Name:
Confidence Code:3
GeneProduct:putative phage late control gene D protein
Cell Localization:()
Synonyms:gpD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05954,COG3500
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68673.1|AE016496_7 (AE016785) pyocin R2_PP, tail formation [Pseudomonas putida KT2440]
          Length = 347

 Score =  379 bits (972), Expect = e-104
 Identities = 177/328 (53%), Positives = 240/328 (73%)

>gb|AAO56868.1| (AE016868) tail protein D [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 347

 Score =  375 bits (964), Expect = e-103
 Identities = 176/328 (53%), Positives = 241/328 (73%)






 
Structural Features:
pfam05954, Phage late control gene D protein (GPD).
CD-Length = 328 residues, 100.0% aligned
Score =  378 bits (971), Expect = 6e-106
Identities = 154/333 (46%), Positives = 196/333 (58%), Gaps = 12/333 (3%)

COG3500, Phage protein D
CD-Length = 350 residues,  97.7% aligned
Score =  337 bits (865), Expect = 1e-93
Identities = 141/342 (41%), Positives = 187/342 (54%), Gaps = 13/342 (3%)






   
Genomic Context:






   
Comment:
other possible gene name: DR2


















    ReferenceID:14515




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21421




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34599




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2136_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2136
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3651
                           PA0628_tr
                           translation of PA0628
                           329
                           98.78
                           99.39
                           0
                           1681.0
     

     
     
112727
                           gb|AAG04017.1|AE004498_12
                           (AE004498) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           329
                           98.48
                           99.39
                           0
                           1678.0
     

     
     
112728
                           dbj|BAA83167.1|
                           (AB030825) PRF23~similar to D genes of P2 and phiCTX: tail formation [Pseudomonas aeruginosa]
                           329
                           98.48
                           99.39
                           0
                           1678.0
     

     
     
112729
                           gb|AAN68673.1|AE016496_7
                           (AE016785) pyocin R2_PP, tail formation [Pseudomonas putida KT2440]
                           347
                           50.72
                           69.16
                           18
                           968.0
     

     
     
112730
                           gb|AAO56868.1|
                           (AE016868) tail protein D [Pseudomonas syringae pv. tomato str. DC3000]
                           347
                           50.43
                           69.45
                           18
                           960.0
     

     






      

          
GC ORFID: 45138How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0628Glimmer Score: 

          
Start: 6500990Stop: 6501979

          
Length: 990


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0628 translation of PA0628Homolog Bit Score 652.0

          
Other Homologs:  t_PA0628 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCAACCGAGTTTCCGTATCGTTGCCGACGGCACCGACGTCACCCAGCGGCTGAATGACCGCCTGCTCAAG 
CTGACCTTGCTGGACAAGCCGGGCATGGAGTCCGACAGCCTGACCTTGAGGCTCGACGATCGCGATGGACAG 
GTGGCCTTACCCAGGCGCGGTGCGGTGCTGGAGGTTCATCTCGGCTATGCCGGCGAGCCACTGATGCGCATG 
GGGCGCTTTACCGTGGACACCCTGCAGTGGGCTGGTCCGCCGGACTGCCTGACCGTCACTGCCAAGGCCGGC 
GACATGCGCGGCAGTGGCAAGACGATACGCAGCGGCGGTTGGGAGGGCACTACCCTGGCTCAGGTCTGCCGC 
GATGTTGGCGCACGCAACGGCTGGCGCGTGGAGTGTCCGTTGCAGGTGGCGATCGCCCGGGTCGACCAGGTC 
AATGAGTCCGACTACCACTTCGTCACCCGTCTGGCGCGCCAGTACGACTGCACCGCCAAGCTGGCCGAGGGC 
ATGCTCATGGTGCTGCCGCGACAGAGCGGGCAGAGCGCCACGGGGCGTCGGATCGAACCTTTGGTGTTGGGA 
CGTGCTGACGTCGGCAGCTTCGACGTTACCTACGACGACCGCAGCCTGATGAGAACGGTGAAGACTCGCTAC 
CAATTGCCCGGCAGCGGCGAGGTCAAGAGCGTCGAGCTGAAGAACCCGAAGGCACCGGCTACGGCTACGGGC 
GAGCATGTCGACCGGCATCTCTATGCCAGCCGTGGAGAGGCCGAGCAGGCGGCGAAGGCTCGCCTGGCGAGC 
TTCAGCCGCTCCAGTGCCAGTGTGCGCCTGGAGTTGCCGGGGCGTGGCGACCTGTTCGCCGAGCGCAGCCTG 
CTGCTCCAAGGCTTCAAGGCGGGAATCGACGGCGAGTTCCTGATCGACTCGGTGGAGCACACCTACAGCTCC 
AGCGGATGGACCACTGTCGTGCAATGCAACGGCGGCCGAGGCGGCAAGGGGTGA