ViewGene
Locus Name:
GeneID:
Location:

GeneID:2134
TrivialName: PA14_01860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01860
PAO1 Ortholog Locus:PA0150
Sequence Length:996
Protein Length:331
Start: 168754
Stop: 169749
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03540.1|AE004453_3 (AE004453) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
Identities = 326/331 (98%), Positives = 328/331 (99%)
Sequence:
ATGACCCGACCCGATAGCGACGCCGCGCCCTACGATCCCGTCCTCGAGCAGACCGCCCAGGTCTGGCTGGTG
CGCCTGCGCGGTACGCCGGATGCGGCGACCCGGCGGGCCTTCGAGGACTGGCTGGCGCAGCGGCCGGCGCAT
GCCGAGGCCTATGCTCGCGCCGAGGCGCTCTGGCGCCTGACGGAAATACCGGCGAGCCGCCTGGCCATCGAA
GAGGCTGATGCCCTGGAAGCCTACCTGCGGCCGCGCCGAGCGTCGCGCAACCCGCGGCGCTGGGCCTACCCG
CTGGCCAGCGTCGCCTGCCTGCTGGCGATGCTCTGGCTGGGCGGCTGGTGGCAGCCCGGCGACTGGCTGCAG
GACTGGCGTGCCGACTATGTCGCCGCGCCGGGACAGGTCGCCGAATGGAAGCTGGCCGATGGCTCCTACCTG
AGCCTGGACGCCGGCAGCGCGGTGCGCGTGCGTATCGACGGCGGCCAGCGGCGGGTCGAACTGCTGCGCGGC
GCCGCCGCGTTGCGGGTGAAGCGCGACACGCTGCCATTCGTGGTCGAGGCCGGCGAAGGCCGGGCGCGGGTA
CTGGGCACCGAGTTCGAGGTCCGTCGCGGCGCCGGGGCGACCCGCGTCACCGTGCTGCAAGGGCGGGTCGCG
GTGAGCGCCGGCACGGGCGCGGGCGCCGCCGAGGAAGTGCTGAGCGCCGGCCAGCAGGTCGGCTTCGCCGAC
GGCAGGCTGGGCCGGCCCGTGGCCATCGACGCCGCCGCCGCGCTGGCCTGGCGCCAGGGCTGGCTGAGCTTC
TACCGGCGGCCGCTGGCGGAAGTGCTCGACGAACTCGCTCGCTACTACCCTGGACGCATTCTCCTGCTCGAC
GACGCGCTCGGCCGCCAGCCGGTCAGCGGCAGCTTCCGCAGCGACGATCCCGAAGCCGCGCTGAAGTCGCTG
CAGGCGGTGCTCGGCTATCGCCAGCAGATCCTGTTCGGACGCCTGGTGGTGATTCGCTGA
Translation:
MTRPDSDAAPYDPVLEQTAQVWLVRLRGTPDAATRRAFEDWLAQRPAHAEAYARAEALWRLTEIPASRLAIE
EADALEAYLRPRRASRNPRRWAYPLASVACLLAMLWLGGWWQPGDWLQDWRADYVAAPGQVAEWKLADGSYL
SLDAGSAVRVRIDGGQRRVELLRGAAALRVKRDTLPFVVEAGEGRARVLGTEFEVRRGAGATRVTVLQGRVA
VSAGTGAGAAEEVLSAGQQVGFADGRLGRPVAIDAAAALAWRQGWLSFYRRPLAEVLDELARYYPGRILLLD
DALGRQPVSGSFRSDDPEAALKSLQAVLGYRQQILFGRLVVIR*
AnnotationID:2142GeneID:2134
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 06:06:27
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane sensor
Cell Localization:()
Synonyms:PA0150
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04773,COG3712
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70180.1|AE016657_5 (AE016791) transmembrane sensor, putative [Pseudomonas putida
           KT2440]
          Length = 326

 Score =  270 bits (689), Expect = 1e-71
 Identities = 152/317 (47%), Positives = 198/317 (62%), Gaps = 5/317 (1%)








 
Structural Features:
pfam04773, FecR, FecR protein. 
FecR is involved in regulation of iron dicitrate transport.
CD-Length = 323 residues, 100.0% aligned
Score =  250 bits (640), Expect = 2e-67
Identities = 151/331 (45%), Positives = 168/331 (50%), Gaps = 14/331 (4%)

COG3712, FecR, Fe2+-dicitrate sensor, membrane component 
[Inorganic ion transport and metabolism / Signal transduction mechanisms]
CD-Length = 322 residues,  99.1% aligned
Score =  237 bits (605), Expect = 2e-63
Identities = 163/330 (49%), Positives = 182/330 (55%), Gaps = 13/330 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4271




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21417




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33523




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2134_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2134
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3649
                           PA0150_tr
                           translation of PA0150
                           331
                           98.48
                           99.09
                           0
                           1682.0
     

     
     
112680
                           gb|AAG03540.1|AE004453_3
                           (AE004453) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           331
                           98.48
                           99.09
                           0
                           1682.0
     

     
     
112681
                           gb|AAN70180.1|AE016657_5
                           (AE016791) transmembrane sensor, putative [Pseudomonas putida KT2440]
                           336
                           45.83
                           60.11
                           15
                           695.0
     

     






      

          
GC ORFID: 45136How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0150Glimmer Score: 

          
Start: 5970093Stop: 5971088

          
Length: 996


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0150 translation of PA0150Homolog Bit Score 652.0

          
Other Homologs:  t_PA0150 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCGACCCGATAGCGACGCCGCGCCCTACGATCCCGTCCTCGAGCAGACCGCCCAGGTCTGGCTGGTG 
CGCCTGCGCGGTACGCCGGATGCGGCGACCCGGCGGGCCTTCGAGGACTGGCTGGCGCAGCGGCCGGCGCAT 
GCCGAGGCCTATGCTCGCGCCGAGGCGCTCTGGCGCCTGACGGAAATACCGGCGAGCCGCCTGGCCATCGAA 
GAGGCTGATGCCCTGGAAGCCTACCTGCGGCCGCGCCGAGCGTCGCGCAACCCGCGGCGCTGGGCCTACCCG 
CTGGCCAGCGTCGCCTGCCTGCTGGCGATGCTCTGGCTGGGCGGCTGGTGGCAGCCCGGCGACTGGCTGCAG 
GACTGGCGTGCCGACTATGTCGCCGCGCCGGGACAGGTCGCCGAATGGAAGCTGGCCGATGGCTCCTACCTG 
AGCCTGGACGCCGGCAGCGCGGTGCGCGTGCGTATCGACGGCGGCCAGCGGCGGGTCGAACTGCTGCGCGGC 
GCCGCCGCGTTGCGGGTGAAGCGCGACACGCTGCCATTCGTGGTCGAGGCCGGCGAAGGCCGGGCGCGGGTA 
CTGGGCACCGAGTTCGAGGTCCGTCGCGGCGCCGGGGCGACCCGCGTCACCGTGCTGCAAGGGCGGGTCGCG 
GTGAGCGCCGGCACGGGCGCGGGCGCCGCCGAGGAAGTGCTGAGCGCCGGCCAGCAGGTCGGCTTCGCCGAC 
GGCAGGCTGGGCCGGCCCGTGGCCATCGACGCCGCCGCCGCGCTGGCCTGGCGCCAGGGCTGGCTGAGCTTC 
TACCGGCGGCCGCTGGCGGAAGTGCTCGACGAACTCGCTCGCTACTACCCTGGACGCATTCTCCTGCTCGAC 
GACGCGCTCGGCCGCCAGCCGGTCAGCGGCAGCTTCCGCAGCGACGATCCCGAAGCCGCGCTGAAGTCGCTG 
CAGGCGGTGCTCGGCTATCGCCAGCAGATCCTGTTCGGACGCCTGGTGGTGATTCGCTGA