ViewGene
Locus Name:
GeneID:
Location:

GeneID:2129
TrivialName: PA14_52630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52630
PAO1 Ortholog Locus:PA0901
Sequence Length:999
Protein Length:332
Start: 4667042
Stop: 4666044
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04290.1|AE004524_7 (AE004524) succinylglutamate desuccinylase [Pseudomonas aeruginosa PAO1]
Identities = 330/332 (99%), Positives = 332/332 (100%)
Sequence:
ATGCTCGCCCTCGGCAAACTGCTCGACTTGACCCTGGCCGGCCGCGAGCCGACCGAGAAGATCCAGCTCACC
GCCGACGGCACCCGCCTGCACTGGCTGGCCGAGGGCGCGCTGGAAGTCACGCCGATCGGCGCCCGCGACAAC
GGCGTCGACCTGTTGCTCTCGGCCGGTATCCACGGCAACGAGACCGCGCCCATCGAACTGCTCGAACGGCTG
ATCCGCAAGGTCGCCGCGGGCACCCTCAAGCCTGCCGCCAGGGTCCTCTTCCTGTTCGGCAACCCAGAAGCC
ATCCGCCGCGGCGAGCGCTACGTCGAACAGGACATGAACCGCCTGTTCAACGGTCGCCACGAGGAGGGCAGC
GGCAACGAGGCCTTCCGTGCCGCCGAGCTGGAGCGCCTGGCCCAGGTGTTCTTCAGCAAGACCGAGCGAGTC
CACCTGCACTACGACCTGCATACCGCGATCCGCGGCTCGAAGATCGAGCAGTTCGCCCTCTACCCCTGGGCC
GAGGGCCGCGAGCATTCCCGCAGCGAACTGGCCCGCCTGCGCGACGCCGGCATCGAGGCGGTGCTGTTGCAG
AACAAGCCGGGCATCACCTTCAGCGCCTACACCTACGGCCAGCTCGGCGCCGAGGCCTTTACCCTGGAACTG
GGCAAGGCACGTCCGTTCGGAGAGAACCAGGAGGTCAACCTGGAGCGCCTGGAGCGGAGCCTGGAGCTGCTG
ATCGACGGCAGCGAGGAACAGCCGGACGGCTCCCGACTCGATGGCCTCAAGCTGTTCAGCGTGTCGCGCGAG
GTGATCAAGCACAGCGACCACTTCCGCCTGCACCTCGACGACGACGTGGCCAACTTCACCGAACTCTCGCCG
GGCTACCTGCTGGCCGAGGATATCGGCGGCACGCGCTGGGTGGTGGAGGAGGTCGGCGCGCGCATCATCTTC
CCCAATCCGCGGGTGAAGAACGGCTTGCGCGCCGGAATCCTGGTGGTGCCGGCCAAGCTCTGA
Translation:
MLALGKLLDLTLAGREPTEKIQLTADGTRLHWLAEGALEVTPIGARDNGVDLLLSAGIHGNETAPIELLERL
IRKVAAGTLKPAARVLFLFGNPEAIRRGERYVEQDMNRLFNGRHEEGSGNEAFRAAELERLAQVFFSKTERV
HLHYDLHTAIRGSKIEQFALYPWAEGREHSRSELARLRDAGIEAVLLQNKPGITFSAYTYGQLGAEAFTLEL
GKARPFGENQEVNLERLERSLELLIDGSEEQPDGSRLDGLKLFSVSREVIKHSDHFRLHLDDDVANFTELSP
GYLLAEDIGGTRWVVEEVGARIIFPNPRVKNGLRAGILVVPAKL*
AnnotationID:2137GeneID:2129
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 11:11:38
Gene Name:aruE
Confidence Code:1
GeneProduct:succinylglutamate desuccinylase
Cell Localization:()
Synonyms:astE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2988
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Arginine and proline metabolism
Homology:






 
Structural Features:
COG2988, Succinylglutamate desuccinylase. Score: 407, 3e-114






   
Genomic Context:
Arginine-ornithine catabolic locus, adjacent to arginine-ornithine transport locus 






   
Comment:


















    ReferenceID:4261




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16990




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA0901_CDS.cgi


    		




 
URL:

















    ReferenceID:21407




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32009




  
Author/Investigator(s):
        Itoh Y.





  
Title:
        Cloning and characterization of the aru genes encoding enzymes of the catabolic arginine succinyltransferase pathway in Pseudomonas aeruginosa.




  
PubMed:
        98053840


MedLine:
        




    
Source:
J Bacteriol. 1997 Dec;179(23):7280-90.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2129
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3639
                           PA0901_tr
                           translation of PA0901
                           332
                           99.39
                           99.99
                           0
                           1684.0
     

     
     
112022
                           gb|AAG04290.1|AE004524_7
                           (AE004524) succinylglutamate desuccinylase [Pseudomonas aeruginosa PAO1]
                           332
                           99.39
                           99.99
                           0
                           1684.0
     

     
     
112023
                           gb|AAC46014.1|
                           (AF011922) succinylglutamate desuccinylase [Pseudomonas aeruginosa]
                           332
                           99.39
                           99.99
                           0
                           1684.0
     

     
     
112024
                           gb|AAO55357.1|
                           (AE016862) succinylglutamate desuccinylase [Pseudomonas syringae pv. tomato str. DC3000]
                           336
                           73.51
                           81.54
                           5
                           1249.0
     

     
     
112025
                           gb|AAN70050.1|AE016644_4
                           (AE016790) succinylglutamate desuccinylase (ec 3.1.-.-) [Pseudomonas putida KT2440]
                           336
                           71.13
                           81.54
                           5
                           1188.0
     

     






      

          
GC ORFID: 45131How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0901Glimmer Score: 

          
Start: 286865Stop: 287863

          
Length: 999


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0901 translation of PA0901Homolog Bit Score 653.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7822 (ORF: BLASTX 477.0), t_PA0901 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCGCCCTCGGCAAACTGCTCGACTTGACCCTGGCCGGCCGCGAGCCGACCGAGAAGATCCAGCTCACC 
GCCGACGGCACCCGCCTGCACTGGCTGGCCGAGGGCGCGCTGGAAGTCACGCCGATCGGCGCCCGCGACAAC 
GGCGTCGACCTGTTGCTCTCGGCCGGTATCCACGGCAACGAGACCGCGCCCATCGAACTGCTCGAACGGCTG 
ATCCGCAAGGTCGCCGCGGGCACCCTCAAGCCTGCCGCCAGGGTCCTCTTCCTGTTCGGCAACCCAGAAGCC 
ATCCGCCGCGGCGAGCGCTACGTCGAACAGGACATGAACCGCCTGTTCAACGGTCGCCACGAGGAGGGCAGC 
GGCAACGAGGCCTTCCGTGCCGCCGAGCTGGAGCGCCTGGCCCAGGTGTTCTTCAGCAAGACCGAGCGAGTC 
CACCTGCACTACGACCTGCATACCGCGATCCGCGGCTCGAAGATCGAGCAGTTCGCCCTCTACCCCTGGGCC 
GAGGGCCGCGAGCATTCCCGCAGCGAACTGGCCCGCCTGCGCGACGCCGGCATCGAGGCGGTGCTGTTGCAG 
AACAAGCCGGGCATCACCTTCAGCGCCTACACCTACGGCCAGCTCGGCGCCGAGGCCTTTACCCTGGAACTG 
GGCAAGGCACGTCCGTTCGGAGAGAACCAGGAGGTCAACCTGGAGCGCCTGGAGCGGAGCCTGGAGCTGCTG 
ATCGACGGCAGCGAGGAACAGCCGGACGGCTCCCGACTCGATGGCCTCAAGCTGTTCAGCGTGTCGCGCGAG 
GTGATCAAGCACAGCGACCACTTCCGCCTGCACCTCGACGACGACGTGGCCAACTTCACCGAACTCTCGCCG 
GGCTACCTGCTGGCCGAGGATATCGGCGGCACGCGCTGGGTGGTGGAGGAGGTCGGCGCGCGCATCATCTTC 
CCCAATCCGCGGGTGAAGAACGGCTTGCGCGCCGGAATCCTGGTGGTGCCGGCCAAGCTCTGA