ViewGene
Locus Name:
GeneID:
Location:

GeneID:2126
TrivialName: PA14_07110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07110
PAO1 Ortholog Locus:PA0547
Sequence Length:1002
Protein Length:333
Start: 615889
Stop: 614888
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03936.1|AE004491_3 (AE004491) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 333/333 (100%), Positives = 333/333 (100%)
Sequence:
ATGAGCCTTCGCGTGCCTTCGATACGACCAGACGACTACGACCCGCTCGCCGCGCTGTGCAAGGCGGCTGGC
GACTCGCTGCGACTGAACGTGTTGCGCGCCCTGGCCAACGATTCGTTCGGCGTGCTGGAGCTGGCGCAGATC
TTCGCCATCGGCCAGTCGGGCATGAGCCACCACCTCAAGGTGCTGGCCCAGGCCGGGCTGGTGGCGACGCGC
CGCGAAGGCAACGCGATCTTCTACCGACGTTCGCTGCCCCTGGCCGAACGCACCGGCGGCGCGCTGCACGCG
GCGCTGCTGGAGGAAGTGGACGAACGGGCGCTACCCGACGACGTGCGGGCGCGGATCGATGCCGTGCACGCC
CAGCGCGCGGCGGTCAGCCAGGACTTCTTCGCCCGCGCGGCGGACAAGTTCCAGGCCCAGCAGGACCTGATC
GCAGGACTGCCGCAATACCGTGAGAGCGTGTTGGCCTTGCTCGACGCACTGGCCTTCGCCCCCGGCGCCACG
GCGCTGGAGGTCGGCCCGGGGGACGGCGGGTTCCTGCCGGAACTCGCCAGGCGTTTCCGCCAGGTCACGGCG
CTGGACAACAGCGCGGCGATGCTGGAACTGGCGCGCCAGCGCTGCAAGGAAGAAGGATTGGGCAACGTCCGC
CTGGAATTGGCCGATGCCCTGCAGGACGCCGCCGAACCGGCCGATTGCGTGGTGCTGAACATGGTCCTGCAC
CACTTCGCCGCGCCGGCGGAGGCGCTGAAACAGTTGGCCCGCCTGGTCCATCCGGGCGGCAGCCTGCTGGTG
ACGGACTTGTGCCGGCACAACCAGGGCTGGGCCAGGGAGGCCTGCGGCGACCTCTGGTTGGGTTTCGAACAG
GAGGACCTGGCCCAGTGGGCCGACGCCGCAGGGCTCACGCCCGGCGAGAGTCTTTACATTGGTTTACGCAAT
GGCTTCCAGATCCAGGTCCGGCACTTCGCCAGGGATGCATCCGAAAGCCGCCTCACCCACCGGTAA
Translation:
MSLRVPSIRPDDYDPLAALCKAAGDSLRLNVLRALANDSFGVLELAQIFAIGQSGMSHHLKVLAQAGLVATR
REGNAIFYRRSLPLAERTGGALHAALLEEVDERALPDDVRARIDAVHAQRAAVSQDFFARAADKFQAQQDLI
AGLPQYRESVLALLDALAFAPGATALEVGPGDGGFLPELARRFRQVTALDNSAAMLELARQRCKEEGLGNVR
LELADALQDAAEPADCVVLNMVLHHFAAPAEALKQLARLVHPGGSLLVTDLCRHNQGWAREACGDLWLGFEQ
EDLAQWADAAGLTPGESLYIGLRNGFQIQVRHFARDASESRLTHR*
AnnotationID:2134GeneID:2126
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 18:06:19
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, ArsR family
Cell Localization:()
Synonyms:PA0547
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53928.1| (AE016857) transcriptional regulator, ArsR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 331

 Score =  488 bits (1255), Expect = e-137
 Identities = 249/328 (75%), Positives = 273/328 (83%)

>gb|AAN70533.1|AE016695_7 (AE016792) transcriptional regulator, ArsR family [Pseudomonas
           putida KT2440]
          Length = 330

 Score =  476 bits (1226), Expect = e-134
 Identities = 247/327 (75%), Positives = 275/327 (84%), Gaps = 1/327 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4255




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21401




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33851




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2126_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2126
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3636
                           PA0547_tr
                           translation of PA0547
                           333
                           99.99
                           99.99
                           0
                           1690.0
     

     
     
112012
                           gb|AAG03936.1|AE004491_3
                           (AE004491) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           333
                           99.99
                           99.99
                           0
                           1690.0
     

     
     
112013
                           gb|AAO53928.1|
                           (AE016857) transcriptional regulator, ArsR family [Pseudomonas syringae pv. tomato str. DC3000]
                           333
                           75.37
                           82.58
                           2
                           1257.0
     

     
     
112014
                           gb|AAN70533.1|AE016695_7
                           (AE016792) transcriptional regulator, ArsR family [Pseudomonas putida KT2440]
                           333
                           74.77
                           83.48
                           3
                           1230.0
     

     






      

          
GC ORFID: 45128How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0547Glimmer Score: 

          
Start: 6417231Stop: 6416230

          
Length: 1002


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0547 translation of PA0547Homolog Bit Score 655.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6865 (ORF: BLASTX 488.0), t_PA0547 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTTCGCGTGCCTTCGATACGACCAGACGACTACGACCCGCTCGCCGCGCTGTGCAAGGCGGCTGGC 
GACTCGCTGCGACTGAACGTGTTGCGCGCCCTGGCCAACGATTCGTTCGGCGTGCTGGAGCTGGCGCAGATC 
TTCGCCATCGGCCAGTCGGGCATGAGCCACCACCTCAAGGTGCTGGCCCAGGCCGGGCTGGTGGCGACGCGC 
CGCGAAGGCAACGCGATCTTCTACCGACGTTCGCTGCCCCTGGCCGAACGCACCGGCGGCGCGCTGCACGCG 
GCGCTGCTGGAGGAAGTGGACGAACGGGCGCTACCCGACGACGTGCGGGCGCGGATCGATGCCGTGCACGCC 
CAGCGCGCGGCGGTCAGCCAGGACTTCTTCGCCCGCGCGGCGGACAAGTTCCAGGCCCAGCAGGACCTGATC 
GCAGGACTGCCGCAATACCGTGAGAGCGTGTTGGCCTTGCTCGACGCACTGGCCTTCGCCCCCGGCGCCACG 
GCGCTGGAGGTCGGCCCGGGGGACGGCGGGTTCCTGCCGGAACTCGCCAGGCGTTTCCGCCAGGTCACGGCG 
CTGGACAACAGCGCGGCGATGCTGGAACTGGCGCGCCAGCGCTGCAAGGAAGAAGGATTGGGCAACGTCCGC 
CTGGAATTGGCCGATGCCCTGCAGGACGCCGCCGAACCGGCCGATTGCGTGGTGCTGAACATGGTCCTGCAC 
CACTTCGCCGCGCCGGCGGAGGCGCTGAAACAGTTGGCCCGCCTGGTCCATCCGGGCGGCAGCCTGCTGGTG 
ACGGACTTGTGCCGGCACAACCAGGGCTGGGCCAGGGAGGCCTGCGGCGACCTCTGGTTGGGTTTCGAACAG 
GAGGACCTGGCCCAGTGGGCCGACGCCGCAGGGCTCACGCCCGGCGAGAGTCTTTACATTGGTTTACGCAAT 
GGCTTCCAGATCCAGGTCCGGCACTTCGCCAGGGATGCATCCGAAAGCCGCCTCACCCACCGGTAA