ViewGene
Locus Name:
GeneID:
Location:

GeneID:2015
TrivialName: PA14_24610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24610
PAO1 Ortholog Locus:PA3053
Sequence Length:1002
Protein Length:333
Start: 2152240
Stop: 2151239
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06441.1|AE004730_5 (AE004730) probable hydrolytic enzyme [Pseudomonas aeruginosa PAO1]
Identities = 332/335 (99%), Positives = 333/335 (99%), Gaps = 2/335 (0%)
Sequence:
ATGTCCCTACCCCGCCTCAGTCTCTGTCTCGCCCTCGCCTGCGGGCCGGCGCTGGCCAGCCAGGCGCCGGTC
TACGGCGAACGCCTGGAAGGCTTCGACTACGCCTATCCGGTGCACTATCTGGACTTCACCTCCCAGGGCCAG
CCGCTGAGCATGGCCTACCTCGACGTCGCGCCGAAGAAAGCCAACGGCCGCACCATCCTGCTCATGCACGGC
AAGAATTTCTGCGCCGGGACCTGGGAGCGCACCATCGACGTGCTCGCCGACGCCGGCTACCGGGTGATCGCC
GTCGACCAGGTCGGCTTCTGCAAGTCGAGCAAGCCGGCCCATTACCAGTACAGCTTCCAGCAACTGGCAGCC
AACACCCACGCCCTGCTGGAACGGCTCGGCGTCGCCCGGGCCAGCGTGATCGGCCATTCCATGGGCGGCATG
CTCGCTACCCGCTACGCCCTGCTCTACCCGCGGCAGGTCGAACGACTGGTGCTGGTCAACCCCATCGGTCTG
GAGGACTGGAAGGCCCTGGGCGTGCCCTGGCGCAGTGTCGACGACTGGTACAGGCGCGACTTGCAGACCAGC
GCCGAAGGCATTCGCCAATACCAGCAAGCCACCTACTACGCCGGCGAATGGCGCCCCGAGTTCGATCGCTGG
GTACAGATGCAGGCCGGCATGTATCGCGGCAAGGGGCGCGAGTCGGTGGCCTGGAACTCGGCGCTGACCTAC
GACATGATCTTCACCCAGCCGGTGGTCTACGAACTGGACCGGTTGCAGATGCCGACCCTGCTGCTGATCGGC
GAGAAAGACAACACCGCCATCGGCAAGGACGCCGCGCCGGCGGAACTGAAAGCCAGGCTGGGCAACTACGCG
CAACTGGGCAAGGACGCCGCCCGACGGATTCCCCAGGCGACCCTGGTGGAATTCCCCGACCTTGGCCATACC
CCGCAGATACAGGCTCCGGAACGCTTCCACCAGGCACTGCTGAAGGGTCTGCAAACCCAGCCCTGA
Translation:
MSLPRLSLCLALACGPALASQAPVYGERLEGFDYAYPVHYLDFTSQGQPLSMAYLDVAPKKANGRTILLMHG
KNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQYSFQQLAANTHALLERLGVARASVIGHSMGGM
LATRYALLYPRQVERLVLVNPIGLEDWKALGVPWRSVDDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFDRW
VQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDRLQMPTLLLIGEKDNTAIGKDAAPAELKARLGNYA
QLGKDAARRIPQATLVEFPDLGHTPQIQAPERFHQALLKGLQTQP*
AnnotationID:2024GeneID:2015
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 08:08:39
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA3053
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative acyltransferase
Functional Category Confidence Code:5
COGs:pfam00561,COG0596
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM42126.1| (AE012398) hydrolase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 331

 Score =  452 bits (1164), Expect = e-126
 Identities = 221/324 (68%), Positives = 257/324 (79%), Gaps = 2/324 (0%)

>gb|AAN67814.1|AE016412_7 (AE016782) hydrolase, alpha/beta fold family [Pseudomonas putida
           KT2440]
          Length = 332

 Score =  448 bits (1152), Expect = e-125
 Identities = 213/324 (65%), Positives = 257/324 (79%), Gaps = 4/324 (1%)

>gb|AAM37882.1| (AE011946) hydrolase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 335

 Score =  433 bits (1114), Expect = e-121
 Identities = 210/324 (64%), Positives = 251/324 (77%), Gaps = 2/324 (0%)








 
Structural Features:
pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. 
CD-Length = 224 residues, 100.0% aligned
Score = 96.0 bits (238), Expect = 5e-21
Identities = 62/240 (25%), Positives = 94/240 (39%), Gaps = 20/240 (8%)

COG0596, MhpC, Predicted hydrolases or acyltransferases 
(alpha/beta hydrolase superfamily)
CD-Length = 282 residues,  95.7% aligned
Score =  101 bits (251), Expect = 1e-22
Identities = 74/288 (25%), Positives = 105/288 (36%), Gaps = 29/288 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4033




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21179




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32450




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2015_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2015
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3505
                           PA3053_tr
                           translation of PA3053
                           335
                           99.10
                           99.40
                           2
                           1740.0
     

     
     
107464
                           gb|AAG06441.1|AE004730_5
                           (AE004730) probable hydrolytic enzyme [Pseudomonas aeruginosa PAO1]
                           335
                           99.10
                           99.40
                           2
                           1740.0
     

     
     
107465
                           gb|AAM42126.1|
                           (AE012398) hydrolase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           334
                           66.46
                           77.24
                           4
                           1163.0
     

     
     
107466
                           gb|AAN67814.1|AE016412_7
                           (AE016782) hydrolase, alpha/beta fold family [Pseudomonas putida KT2440]
                           335
                           63.88
                           77.31
                           5
                           1149.0
     

     
     
107467
                           gb|AAM37882.1|
                           (AE011946) hydrolase [Xanthomonas axonopodis pv. citri str. 306]
                           338
                           62.42
                           74.55
                           8
                           1112.0
     

     






      

          
GC ORFID: 45017How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3053Glimmer Score: 

          
Start: 2801689Stop: 2802690

          
Length: 1002


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3053 translation of PA3053Homolog Bit Score 674.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene62 (ORF: BLASTX 437.0), t_PA3053 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCTACCCCGCCTCAGTCTCTGTCTCGCCCTCGCCTGCGGGCCGGCGCTGGCCAGCCAGGCGCCGGTC 
TACGGCGAACGCCTGGAAGGCTTCGACTACGCCTATCCGGTGCACTATCTGGACTTCACCTCCCAGGGCCAG 
CCGCTGAGCATGGCCTACCTCGACGTCGCGCCGAAGAAAGCCAACGGCCGCACCATCCTGCTCATGCACGGC 
AAGAATTTCTGCGCCGGGACCTGGGAGCGCACCATCGACGTGCTCGCCGACGCCGGCTACCGGGTGATCGCC 
GTCGACCAGGTCGGCTTCTGCAAGTCGAGCAAGCCGGCCCATTACCAGTACAGCTTCCAGCAACTGGCAGCC 
AACACCCACGCCCTGCTGGAACGGCTCGGCGTCGCCCGGGCCAGCGTGATCGGCCATTCCATGGGCGGCATG 
CTCGCTACCCGCTACGCCCTGCTCTACCCGCGGCAGGTCGAACGACTGGTGCTGGTCAACCCCATCGGTCTG 
GAGGACTGGAAGGCCCTGGGCGTGCCCTGGCGCAGTGTCGACGACTGGTACAGGCGCGACTTGCAGACCAGC 
GCCGAAGGCATTCGCCAATACCAGCAAGCCACCTACTACGCCGGCGAATGGCGCCCCGAGTTCGATCGCTGG 
GTACAGATGCAGGCCGGCATGTATCGCGGCAAGGGGCGCGAGTCGGTGGCCTGGAACTCGGCGCTGACCTAC 
GACATGATCTTCACCCAGCCGGTGGTCTACGAACTGGACCGGTTGCAGATGCCGACCCTGCTGCTGATCGGC 
GAGAAAGACAACACCGCCATCGGCAAGGACGCCGCGCCGGCGGAACTGAAAGCCAGGCTGGGCAACTACGCG 
CAACTGGGCAAGGACGCCGCCCGACGGATTCCCCAGGCGACCCTGGTGGAATTCCCCGACCTTGGCCATACC 
CCGCAGATACAGGCTCCGGAACGCTTCCACCAGGCACTGCTGAAGGGTCTGCAAACCCAGCCCTGA