ViewGene
Locus Name:
GeneID:
Location:

GeneID:201
TrivialName: PA14_17150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17150
PAO1 Ortholog Locus:PA3648
Sequence Length:2385
Protein Length:794
Start: 1470564
Stop: 1472948
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07036.1|AE004784_9 (AE004784) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 784/797 (98%), Positives = 786/797 (98%), Gaps = 3/797 (0%)
Sequence:
ATGAAACGCTTTCTGCTACCCGCGCTGCTGTCAGCGCTGATGATCGCCGAGGTTCACGCCGAGTCCTTCACT
GTTTCCGATATCCGGGTCAATGGCCTGCAGCGCGTGTCCGCCGGTAGCGTGTTCGCCGCCCTGCCGCTGAAC
GTCGGCGAGACCATCGACGACCAGGCCCTGGTCCAGGCCACCCGCTCCCTGTTCAAGACCGGTTTCTTCCAG
GACATCCAGCTCGGCCGCGATGGCAACGTGCTGGTAGTCACTGTAGTCGAGCGCCCGTCGATCTCCAGCATC
GAGATCGAGGGCAACAAGGCGATTTCCAAGGAAGACCTGCTCAAGGGCCTGAAACAGTCCGGCCTGGCCGAG
GGCGAGATCTTCCAGCGCGCCACCCTCGAAGGCGTGCGCAACGAGCTGCAACGCCAGTACGTGGCCCAGGGC
CGCTACTCGGCCGAGATCAACGCGGAAGTGATCCCGCAGCCGCGCAACCGCGTCGCGCTGAAGATCAACATC
AACGAAGGCACGGTCGCTGCGATTTCCCACATCAACGTGGTGGGCAACACCGTCTTCTCCGAAGAAGACCTG
ACCGACCTGTTCGAACTGAAGACCACCAACTGGCTGTCGTTCTTCAAGAACGACGACAAGTACGCCCGCGAA
AAGCTCTCCGGCGACCTTGAGCGCCTGCGCTCCTATTACCTGGACCGCGGCTACATCAACATGGATATCGCC
TCCACCCAGGTATCCATCACCCCGGACAAGAAGCACGTCTACATCACCGTCAACATCAACGAGGGTGAGAAG
TACACCATCCGCGACGTGAAGCTGACCGGCGACCTGAAGGTGCCGGAAGAGGAAGTGAAGCGCCTGCTGCTG
GTACAGAAGGGCCAGGTGTTCTCGCGCAAGGTGATGACCACCACCTCCGACCTGATCACCCGTCGCCTGGGC
AACGAGGGCTACACCTTCGCCAACGTCAACGGCGTGCCGGAAGCCCATGACGACGACAAGACCGTCTCGGTG
ACCTTCGTCGTCGACCCGGGCAAGCGCGCCTACGTCAACCGCATCAACTTCCGCGGCAACACCAAGACCGAA
GACGAAGTGCTGCGCCGCGAAATGCGCCAGATGGAGGGCGGCTGGGCCTCCACCTACCTGATCGACCAGTCC
AAGGCCCGTCTGGAGCGCCTCGGCTACTTCAAGGAAGTCAACGTCGAGACCCCGGCGGTTCCCGGCACCGAC
GACCAGGTCGACGTCAACTACAGCGTCGAAGAGCAACCGTCCGGCTCGATCACCGCCAGCGTCGGCTTCGCC
CAGAGCGCCGGCCTGATCCTCGGTGGCTCGATCAGCCAGAACAACTTCCTGGGTACCGGCAACAAGGTCAGC
ATCGGCCTGACCCGCAGCGAATACCAGACCCGCTACAACTTCGGCTTCGTCGACCCCTACTGGACCGTCGAC
GGCGTCAGCCTCGGCTACAACGCCTTCTACCGGAAGACCGACTACGACGAACTCGACGTCGACGTCGCCAGC
TACTCGGTGAACAGCCTGGGCGCCGGCATGAGCATCGGCTACCCGATCAGCGAGACCTCGCGCCTGACCTAT
GGGCTGAGCGTGCAGCGCGACCAGATCGACACCGGCCGCTACACCGTGGACGAGATCTACGACTTCCTCGAC
AAGGAAGGCGACAACTTCACCAACTTCAAGGCTTCCATCGGCTGGTCCGAATCGACCCTGAACAAGGGCGTG
CTGGCCACCCGTGGTCACTCGCAGAGCCTGACCCTGGAAACCACCCTGCCGGGCAGCGACCTGTCGTTCTAC
AAGATCGACTACCGCGGGCAGGTCTTTGCCCCGCTGACCGACAACTACACCATGCGCTTCCACACCGAGCTG
GGCTATGGCGACGGCTACGGATCCACCGAGCGCCTGCCGTTCTACGAGAACTACTACGCCGGCGGCTTCAAC
TCGGTGCGAGGCTTCAAGGACAGCACGCTGGGGCCTCGTAGTACTCCCTCTAGGGCTTACAAGGATGGGAAG
ATCATTCCTGGGCCTGATGAACGTGGTCGCTACACCGACCCGGACCAGGATCCCGAAGCCTTCGGTGGTAAC
ATCCTGATCACCGGCGGCGCCGAGCTGCTGTTCCCGCTGCCGTTCGTCAAGGACCAGCGCCAGTTGCGTACC
GTGCTGTTCTGGGACGTGGGTAGCACCTTCGATACCGACTGCCCGACCAATACCACCACCAACTGCGACGGC
ATCAAGACCGACAACCTCGCCAGTTCCGTGGGCGTCGGCCTGACCTGGATCACCGCGCTGGGCCCGCTGAGC
TTCAGCCTGGCGACGCCGATCAAGAAGCCGGACAACGCGGAAACCCAGGTCTTCCAGTTCTCCCTGGGCCAG
ACCTTCTGA
Translation:
MKRFLLPALLSALMIAEVHAESFTVSDIRVNGLQRVSAGSVFAALPLNVGETIDDQALVQATRSLFKTGFFQ
DIQLGRDGNVLVVTVVERPSISSIEIEGNKAISKEDLLKGLKQSGLAEGEIFQRATLEGVRNELQRQYVAQG
RYSAEINAEVIPQPRNRVALKININEGTVAAISHINVVGNTVFSEEDLTDLFELKTTNWLSFFKNDDKYARE
KLSGDLERLRSYYLDRGYINMDIASTQVSITPDKKHVYITVNINEGEKYTIRDVKLTGDLKVPEEEVKRLLL
VQKGQVFSRKVMTTTSDLITRRLGNEGYTFANVNGVPEAHDDDKTVSVTFVVDPGKRAYVNRINFRGNTKTE
DEVLRREMRQMEGGWASTYLIDQSKARLERLGYFKEVNVETPAVPGTDDQVDVNYSVEEQPSGSITASVGFA
QSAGLILGGSISQNNFLGTGNKVSIGLTRSEYQTRYNFGFVDPYWTVDGVSLGYNAFYRKTDYDELDVDVAS
YSVNSLGAGMSIGYPISETSRLTYGLSVQRDQIDTGRYTVDEIYDFLDKEGDNFTNFKASIGWSESTLNKGV
LATRGHSQSLTLETTLPGSDLSFYKIDYRGQVFAPLTDNYTMRFHTELGYGDGYGSTERLPFYENYYAGGFN
SVRGFKDSTLGPRSTPSRAYKDGKIIPGPDERGRYTDPDQDPEAFGGNILITGGAELLFPLPFVKDQRQLRT
VLFWDVGSTFDTDCPTNTTTNCDGIKTDNLASSVGVGLTWITALGPLSFSLATPIKKPDNAETQVFQFSLGQ
TF*
AnnotationID:211GeneID:201
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 05:05:44
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane antigen
Cell Localization:()
Synonyms:PA3648
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4775,pfam01103
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67220.1|AE016349_1 (AE016779) outer membrane protein, bacterial surface antigen family
           [Pseudomonas putida KT2440]
          Length = 786

 Score = 1330 bits (3443), Expect = 0.0
 Identities = 660/794 (83%), Positives = 723/794 (91%), Gaps = 8/794 (1%)

>gb|AAM36284.1| (AE011773) outer membrane antigen [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 788

 Score =  663 bits (1710), Expect = 0.0
 Identities = 353/814 (43%), Positives = 499/814 (61%), Gaps = 53/814 (6%)








 
Structural Features:
COG4775, Outer membrane protein/protective antigen OMA87 
[Cell envelope biogenesis, outer membrane]
CD-Length = 766 residues,  99.7% aligned
Score =  727 bits (1878), Expect = 0.0
Identities = 325/797 (40%), Positives = 452/797 (56%), Gaps = 36/797 (4%)

pfam01103, Bac_surface_Ag, Surface antigen.
CD-Length = 313 residues, 100.0% aligned
Score =  247 bits (633), Expect = 6e-66
Identities = 119/363 (32%), Positives = 163/363 (44%), Gaps = 55/363 (15%)






   
Genomic Context:






   
Comment:


















    ReferenceID:405




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17547




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31895




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:201_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:201
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
343
                           PA3648_tr
                           translation of PA3648
                           797
                           98.36
                           98.61
                           3
                           4008.0
     

     
     
21707
                           gb|AAG07036.1|AE004784_9
                           (AE004784) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           797
                           98.36
                           98.61
                           3
                           4008.0
     

     
     
21708
                           gb|AAN67220.1|AE016349_1
                           (AE016779) outer membrane protein, bacterial surface antigen family [Pseudomonas putida KT2440]
                           794
                           83.12
                           91.05
                           8
                           3450.0
     

     
     
21709
                           gb|AAO55062.1|
                           (AE016861) outer membrane protein [Pseudomonas syringae pv. tomato str. DC3000]
                           801
                           82.02
                           90.51
                           13
                           3425.0
     

     
     
21710
                           gb|AAN68977.1|AE016529_8
                           (AE016786) bacterial surface antigen family protein [Pseudomonas putida KT2440]
                           798
                           76.94
                           84.83
                           15
                           3157.0
     

     






      

          
GC ORFID: 43203How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3648Glimmer Score: 

          
Start: 3483373Stop: 3480989

          
Length: 2385


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3648 translation of PA3648Homolog Bit Score 1546.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4627 (ORF: BLASTX 1313.0), psyr_15may02_Scaffold5_revised_gene6022 (ORF: BLASTX 1168.0), t_PA3648 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGCTTTCTGCTACCCGCGCTGCTGTCAGCGCTGATGATCGCCGAGGTTCACGCCGAGTCCTTCACT 
GTTTCCGATATCCGGGTCAATGGCCTGCAGCGCGTGTCCGCCGGTAGCGTGTTCGCCGCCCTGCCGCTGAAC 
GTCGGCGAGACCATCGACGACCAGGCCCTGGTCCAGGCCACCCGCTCCCTGTTCAAGACCGGTTTCTTCCAG 
GACATCCAGCTCGGCCGCGATGGCAACGTGCTGGTAGTCACTGTAGTCGAGCGCCCGTCGATCTCCAGCATC 
GAGATCGAGGGCAACAAGGCGATTTCCAAGGAAGACCTGCTCAAGGGCCTGAAACAGTCCGGCCTGGCCGAG 
GGCGAGATCTTCCAGCGCGCCACCCTCGAAGGCGTGCGCAACGAGCTGCAACGCCAGTACGTGGCCCAGGGC 
CGCTACTCGGCCGAGATCAACGCGGAAGTGATCCCGCAGCCGCGCAACCGCGTCGCGCTGAAGATCAACATC 
AACGAAGGCACGGTCGCTGCGATTTCCCACATCAACGTGGTGGGCAACACCGTCTTCTCCGAAGAAGACCTG 
ACCGACCTGTTCGAACTGAAGACCACCAACTGGCTGTCGTTCTTCAAGAACGACGACAAGTACGCCCGCGAA 
AAGCTCTCCGGCGACCTTGAGCGCCTGCGCTCCTATTACCTGGACCGCGGCTACATCAACATGGATATCGCC 
TCCACCCAGGTATCCATCACCCCGGACAAGAAGCACGTCTACATCACCGTCAACATCAACGAGGGTGAGAAG 
TACACCATCCGCGACGTGAAGCTGACCGGCGACCTGAAGGTGCCGGAAGAGGAAGTGAAGCGCCTGCTGCTG 
GTACAGAAGGGCCAGGTGTTCTCGCGCAAGGTGATGACCACCACCTCCGACCTGATCACCCGTCGCCTGGGC 
AACGAGGGCTACACCTTCGCCAACGTCAACGGCGTGCCGGAAGCCCATGACGACGACAAGACCGTCTCGGTG 
ACCTTCGTCGTCGACCCGGGCAAGCGCGCCTACGTCAACCGCATCAACTTCCGCGGCAACACCAAGACCGAA 
GACGAAGTGCTGCGCCGCGAAATGCGCCAGATGGAGGGCGGCTGGGCCTCCACCTACCTGATCGACCAGTCC 
AAGGCCCGTCTGGAGCGCCTCGGCTACTTCAAGGAAGTCAACGTCGAGACCCCGGCGGTTCCCGGCACCGAC 
GACCAGGTCGACGTCAACTACAGCGTCGAAGAGCAACCGTCCGGCTCGATCACCGCCAGCGTCGGCTTCGCC 
CAGAGCGCCGGCCTGATCCTCGGTGGCTCGATCAGCCAGAACAACTTCCTGGGTACCGGCAACAAGGTCAGC 
ATCGGCCTGACCCGCAGCGAATACCAGACCCGCTACAACTTCGGCTTCGTCGACCCCTACTGGACCGTCGAC 
GGCGTCAGCCTCGGCTACAACGCCTTCTACCGGAAGACCGACTACGACGAACTCGACGTCGACGTCGCCAGC 
TACTCGGTGAACAGCCTGGGCGCCGGCATGAGCATCGGCTACCCGATCAGCGAGACCTCGCGCCTGACCTAT 
GGGCTGAGCGTGCAGCGCGACCAGATCGACACCGGCCGCTACACCGTGGACGAGATCTACGACTTCCTCGAC 
AAGGAAGGCGACAACTTCACCAACTTCAAGGCTTCCATCGGCTGGTCCGAATCGACCCTGAACAAGGGCGTG 
CTGGCCACCCGTGGTCACTCGCAGAGCCTGACCCTGGAAACCACCCTGCCGGGCAGCGACCTGTCGTTCTAC 
AAGATCGACTACCGCGGGCAGGTCTTTGCCCCGCTGACCGACAACTACACCATGCGCTTCCACACCGAGCTG 
GGCTATGGCGACGGCTACGGATCCACCGAGCGCCTGCCGTTCTACGAGAACTACTACGCCGGCGGCTTCAAC 
TCGGTGCGAGGCTTCAAGGACAGCACGCTGGGGCCTCGTAGTACTCCCTCTAGGGCTTACAAGGATGGGAAG 
ATCATTCCTGGGCCTGATGAACGTGGTCGCTACACCGACCCGGACCAGGATCCCGAAGCCTTCGGTGGTAAC 
ATCCTGATCACCGGCGGCGCCGAGCTGCTGTTCCCGCTGCCGTTCGTCAAGGACCAGCGCCAGTTGCGTACC 
GTGCTGTTCTGGGACGTGGGTAGCACCTTCGATACCGACTGCCCGACCAATACCACCACCAACTGCGACGGC 
ATCAAGACCGACAACCTCGCCAGTTCCGTGGGCGTCGGCCTGACCTGGATCACCGCGCTGGGCCCGCTGAGC 
TTCAGCCTGGCGACGCCGATCAAGAAGCCGGACAACGCGGAAACCCAGGTCTTCCAGTTCTCCCTGGGCCAG 
ACCTTCTGA