ViewGene

Locus Name:
GeneID:
Location:

GeneID:201
TrivialName: PA14_17150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17150
PAO1 Ortholog Locus:PA3648
Sequence Length:2385
Protein Length:794
Start: 1470564
Stop: 1472948
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07036.1|AE004784_9 (AE004784) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 784/797 (98%), Positives = 786/797 (98%), Gaps = 3/797 (0%)
Sequence:
ATGAAACGCTTTCTGCTACCCGCGCTGCTGTCAGCGCTGATGATCGCCGAGGTTCACGCCGAGTCCTTCACT
GTTTCCGATATCCGGGTCAATGGCCTGCAGCGCGTGTCCGCCGGTAGCGTGTTCGCCGCCCTGCCGCTGAAC
GTCGGCGAGACCATCGACGACCAGGCCCTGGTCCAGGCCACCCGCTCCCTGTTCAAGACCGGTTTCTTCCAG
GACATCCAGCTCGGCCGCGATGGCAACGTGCTGGTAGTCACTGTAGTCGAGCGCCCGTCGATCTCCAGCATC
GAGATCGAGGGCAACAAGGCGATTTCCAAGGAAGACCTGCTCAAGGGCCTGAAACAGTCCGGCCTGGCCGAG
GGCGAGATCTTCCAGCGCGCCACCCTCGAAGGCGTGCGCAACGAGCTGCAACGCCAGTACGTGGCCCAGGGC
CGCTACTCGGCCGAGATCAACGCGGAAGTGATCCCGCAGCCGCGCAACCGCGTCGCGCTGAAGATCAACATC
AACGAAGGCACGGTCGCTGCGATTTCCCACATCAACGTGGTGGGCAACACCGTCTTCTCCGAAGAAGACCTG
ACCGACCTGTTCGAACTGAAGACCACCAACTGGCTGTCGTTCTTCAAGAACGACGACAAGTACGCCCGCGAA
AAGCTCTCCGGCGACCTTGAGCGCCTGCGCTCCTATTACCTGGACCGCGGCTACATCAACATGGATATCGCC
TCCACCCAGGTATCCATCACCCCGGACAAGAAGCACGTCTACATCACCGTCAACATCAACGAGGGTGAGAAG
TACACCATCCGCGACGTGAAGCTGACCGGCGACCTGAAGGTGCCGGAAGAGGAAGTGAAGCGCCTGCTGCTG
GTACAGAAGGGCCAGGTGTTCTCGCGCAAGGTGATGACCACCACCTCCGACCTGATCACCCGTCGCCTGGGC
AACGAGGGCTACACCTTCGCCAACGTCAACGGCGTGCCGGAAGCCCATGACGACGACAAGACCGTCTCGGTG
ACCTTCGTCGTCGACCCGGGCAAGCGCGCCTACGTCAACCGCATCAACTTCCGCGGCAACACCAAGACCGAA
GACGAAGTGCTGCGCCGCGAAATGCGCCAGATGGAGGGCGGCTGGGCCTCCACCTACCTGATCGACCAGTCC
AAGGCCCGTCTGGAGCGCCTCGGCTACTTCAAGGAAGTCAACGTCGAGACCCCGGCGGTTCCCGGCACCGAC
GACCAGGTCGACGTCAACTACAGCGTCGAAGAGCAACCGTCCGGCTCGATCACCGCCAGCGTCGGCTTCGCC
CAGAGCGCCGGCCTGATCCTCGGTGGCTCGATCAGCCAGAACAACTTCCTGGGTACCGGCAACAAGGTCAGC
ATCGGCCTGACCCGCAGCGAATACCAGACCCGCTACAACTTCGGCTTCGTCGACCCCTACTGGACCGTCGAC
GGCGTCAGCCTCGGCTACAACGCCTTCTACCGGAAGACCGACTACGACGAACTCGACGTCGACGTCGCCAGC
TACTCGGTGAACAGCCTGGGCGCCGGCATGAGCATCGGCTACCCGATCAGCGAGACCTCGCGCCTGACCTAT
GGGCTGAGCGTGCAGCGCGACCAGATCGACACCGGCCGCTACACCGTGGACGAGATCTACGACTTCCTCGAC
AAGGAAGGCGACAACTTCACCAACTTCAAGGCTTCCATCGGCTGGTCCGAATCGACCCTGAACAAGGGCGTG
CTGGCCACCCGTGGTCACTCGCAGAGCCTGACCCTGGAAACCACCCTGCCGGGCAGCGACCTGTCGTTCTAC
AAGATCGACTACCGCGGGCAGGTCTTTGCCCCGCTGACCGACAACTACACCATGCGCTTCCACACCGAGCTG
GGCTATGGCGACGGCTACGGATCCACCGAGCGCCTGCCGTTCTACGAGAACTACTACGCCGGCGGCTTCAAC
TCGGTGCGAGGCTTCAAGGACAGCACGCTGGGGCCTCGTAGTACTCCCTCTAGGGCTTACAAGGATGGGAAG
ATCATTCCTGGGCCTGATGAACGTGGTCGCTACACCGACCCGGACCAGGATCCCGAAGCCTTCGGTGGTAAC
ATCCTGATCACCGGCGGCGCCGAGCTGCTGTTCCCGCTGCCGTTCGTCAAGGACCAGCGCCAGTTGCGTACC
GTGCTGTTCTGGGACGTGGGTAGCACCTTCGATACCGACTGCCCGACCAATACCACCACCAACTGCGACGGC
ATCAAGACCGACAACCTCGCCAGTTCCGTGGGCGTCGGCCTGACCTGGATCACCGCGCTGGGCCCGCTGAGC
TTCAGCCTGGCGACGCCGATCAAGAAGCCGGACAACGCGGAAACCCAGGTCTTCCAGTTCTCCCTGGGCCAG
ACCTTCTGA
Translation:
MKRFLLPALLSALMIAEVHAESFTVSDIRVNGLQRVSAGSVFAALPLNVGETIDDQALVQATRSLFKTGFFQ
DIQLGRDGNVLVVTVVERPSISSIEIEGNKAISKEDLLKGLKQSGLAEGEIFQRATLEGVRNELQRQYVAQG
RYSAEINAEVIPQPRNRVALKININEGTVAAISHINVVGNTVFSEEDLTDLFELKTTNWLSFFKNDDKYARE
KLSGDLERLRSYYLDRGYINMDIASTQVSITPDKKHVYITVNINEGEKYTIRDVKLTGDLKVPEEEVKRLLL
VQKGQVFSRKVMTTTSDLITRRLGNEGYTFANVNGVPEAHDDDKTVSVTFVVDPGKRAYVNRINFRGNTKTE
DEVLRREMRQMEGGWASTYLIDQSKARLERLGYFKEVNVETPAVPGTDDQVDVNYSVEEQPSGSITASVGFA
QSAGLILGGSISQNNFLGTGNKVSIGLTRSEYQTRYNFGFVDPYWTVDGVSLGYNAFYRKTDYDELDVDVAS
YSVNSLGAGMSIGYPISETSRLTYGLSVQRDQIDTGRYTVDEIYDFLDKEGDNFTNFKASIGWSESTLNKGV
LATRGHSQSLTLETTLPGSDLSFYKIDYRGQVFAPLTDNYTMRFHTELGYGDGYGSTERLPFYENYYAGGFN
SVRGFKDSTLGPRSTPSRAYKDGKIIPGPDERGRYTDPDQDPEAFGGNILITGGAELLFPLPFVKDQRQLRT
VLFWDVGSTFDTDCPTNTTTNCDGIKTDNLASSVGVGLTWITALGPLSFSLATPIKKPDNAETQVFQFSLGQ
TF*
AnnotationID:211GeneID:201
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 05:05:44
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane antigen
Cell Localization:()
Synonyms:PA3648
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4775,pfam01103
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67220.1|AE016349_1 (AE016779) outer membrane protein, bacterial surface antigen family
           [Pseudomonas putida KT2440]
          Length = 786

 Score = 1330 bits (3443), Expect = 0.0
 Identities = 660/794 (83%), Positives = 723/794 (91%), Gaps = 8/794 (1%)

>gb|AAM36284.1| (AE011773) outer membrane antigen [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 788

 Score =  663 bits (1710), Expect = 0.0
 Identities = 353/814 (43%), Positives = 499/814 (61%), Gaps = 53/814 (6%)

Structural Features:
COG4775, Outer membrane protein/protective antigen OMA87 
[Cell envelope biogenesis, outer membrane]
CD-Length = 766 residues,  99.7% aligned
Score =  727 bits (1878), Expect = 0.0
Identities = 325/797 (40%), Positives = 452/797 (56%), Gaps = 36/797 (4%)

pfam01103, Bac_surface_Ag, Surface antigen.
CD-Length = 313 residues, 100.0% aligned
Score =  247 bits (633), Expect = 6e-66
Identities = 119/363 (32%), Positives = 163/363 (44%), Gaps = 55/363 (15%)
Genomic Context:
Comment:
ReferenceID:405
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17547
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31895
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:201_cdd.html
URL:
Homologs By Global Alignment
Gene ID:201

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
343 PA3648_tr translation of PA3648 797 98.36 98.61 3 4008.0
21707 gb|AAG07036.1|AE004784_9 (AE004784) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1] 797 98.36 98.61 3 4008.0
21708 gb|AAN67220.1|AE016349_1 (AE016779) outer membrane protein, bacterial surface antigen family [Pseudomonas putida KT2440] 794 83.12 91.05 8 3450.0
21709 gb|AAO55062.1| (AE016861) outer membrane protein [Pseudomonas syringae pv. tomato str. DC3000] 801 82.02 90.51 13 3425.0
21710 gb|AAN68977.1|AE016529_8 (AE016786) bacterial surface antigen family protein [Pseudomonas putida KT2440] 798 76.94 84.83 15 3157.0
GC ORFID: 43203How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3648Glimmer Score:
Start: 3483373Stop: 3480989
Length: 2385
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3648 translation of PA3648Homolog Bit Score 1546.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4627 (ORF: BLASTX 1313.0), psyr_15may02_Scaffold5_revised_gene6022 (ORF: BLASTX 1168.0), t_PA3648 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACGCTTTCTGCTACCCGCGCTGCTGTCAGCGCTGATGATCGCCGAGGTTCACGCCGAGTCCTTCACT
GTTTCCGATATCCGGGTCAATGGCCTGCAGCGCGTGTCCGCCGGTAGCGTGTTCGCCGCCCTGCCGCTGAAC
GTCGGCGAGACCATCGACGACCAGGCCCTGGTCCAGGCCACCCGCTCCCTGTTCAAGACCGGTTTCTTCCAG
GACATCCAGCTCGGCCGCGATGGCAACGTGCTGGTAGTCACTGTAGTCGAGCGCCCGTCGATCTCCAGCATC
GAGATCGAGGGCAACAAGGCGATTTCCAAGGAAGACCTGCTCAAGGGCCTGAAACAGTCCGGCCTGGCCGAG
GGCGAGATCTTCCAGCGCGCCACCCTCGAAGGCGTGCGCAACGAGCTGCAACGCCAGTACGTGGCCCAGGGC
CGCTACTCGGCCGAGATCAACGCGGAAGTGATCCCGCAGCCGCGCAACCGCGTCGCGCTGAAGATCAACATC
AACGAAGGCACGGTCGCTGCGATTTCCCACATCAACGTGGTGGGCAACACCGTCTTCTCCGAAGAAGACCTG
ACCGACCTGTTCGAACTGAAGACCACCAACTGGCTGTCGTTCTTCAAGAACGACGACAAGTACGCCCGCGAA
AAGCTCTCCGGCGACCTTGAGCGCCTGCGCTCCTATTACCTGGACCGCGGCTACATCAACATGGATATCGCC
TCCACCCAGGTATCCATCACCCCGGACAAGAAGCACGTCTACATCACCGTCAACATCAACGAGGGTGAGAAG
TACACCATCCGCGACGTGAAGCTGACCGGCGACCTGAAGGTGCCGGAAGAGGAAGTGAAGCGCCTGCTGCTG
GTACAGAAGGGCCAGGTGTTCTCGCGCAAGGTGATGACCACCACCTCCGACCTGATCACCCGTCGCCTGGGC
AACGAGGGCTACACCTTCGCCAACGTCAACGGCGTGCCGGAAGCCCATGACGACGACAAGACCGTCTCGGTG
ACCTTCGTCGTCGACCCGGGCAAGCGCGCCTACGTCAACCGCATCAACTTCCGCGGCAACACCAAGACCGAA
GACGAAGTGCTGCGCCGCGAAATGCGCCAGATGGAGGGCGGCTGGGCCTCCACCTACCTGATCGACCAGTCC
AAGGCCCGTCTGGAGCGCCTCGGCTACTTCAAGGAAGTCAACGTCGAGACCCCGGCGGTTCCCGGCACCGAC
GACCAGGTCGACGTCAACTACAGCGTCGAAGAGCAACCGTCCGGCTCGATCACCGCCAGCGTCGGCTTCGCC
CAGAGCGCCGGCCTGATCCTCGGTGGCTCGATCAGCCAGAACAACTTCCTGGGTACCGGCAACAAGGTCAGC
ATCGGCCTGACCCGCAGCGAATACCAGACCCGCTACAACTTCGGCTTCGTCGACCCCTACTGGACCGTCGAC
GGCGTCAGCCTCGGCTACAACGCCTTCTACCGGAAGACCGACTACGACGAACTCGACGTCGACGTCGCCAGC
TACTCGGTGAACAGCCTGGGCGCCGGCATGAGCATCGGCTACCCGATCAGCGAGACCTCGCGCCTGACCTAT
GGGCTGAGCGTGCAGCGCGACCAGATCGACACCGGCCGCTACACCGTGGACGAGATCTACGACTTCCTCGAC
AAGGAAGGCGACAACTTCACCAACTTCAAGGCTTCCATCGGCTGGTCCGAATCGACCCTGAACAAGGGCGTG
CTGGCCACCCGTGGTCACTCGCAGAGCCTGACCCTGGAAACCACCCTGCCGGGCAGCGACCTGTCGTTCTAC
AAGATCGACTACCGCGGGCAGGTCTTTGCCCCGCTGACCGACAACTACACCATGCGCTTCCACACCGAGCTG
GGCTATGGCGACGGCTACGGATCCACCGAGCGCCTGCCGTTCTACGAGAACTACTACGCCGGCGGCTTCAAC
TCGGTGCGAGGCTTCAAGGACAGCACGCTGGGGCCTCGTAGTACTCCCTCTAGGGCTTACAAGGATGGGAAG
ATCATTCCTGGGCCTGATGAACGTGGTCGCTACACCGACCCGGACCAGGATCCCGAAGCCTTCGGTGGTAAC
ATCCTGATCACCGGCGGCGCCGAGCTGCTGTTCCCGCTGCCGTTCGTCAAGGACCAGCGCCAGTTGCGTACC
GTGCTGTTCTGGGACGTGGGTAGCACCTTCGATACCGACTGCCCGACCAATACCACCACCAACTGCGACGGC
ATCAAGACCGACAACCTCGCCAGTTCCGTGGGCGTCGGCCTGACCTGGATCACCGCGCTGGGCCCGCTGAGC
TTCAGCCTGGCGACGCCGATCAAGAAGCCGGACAACGCGGAAACCCAGGTCTTCCAGTTCTCCCTGGGCCAG
ACCTTCTGA