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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG07036.1|AE004784_9 (AE004784) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 784/797 (98%), Positives = 786/797 (98%), Gaps = 3/797 (0%)
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Sequence:
ATGAAACGCTTTCTGCTACCCGCGCTGCTGTCAGCGCTGATGATCGCCGAGGTTCACGCCGAGTCCTTCACT
GTTTCCGATATCCGGGTCAATGGCCTGCAGCGCGTGTCCGCCGGTAGCGTGTTCGCCGCCCTGCCGCTGAAC
GTCGGCGAGACCATCGACGACCAGGCCCTGGTCCAGGCCACCCGCTCCCTGTTCAAGACCGGTTTCTTCCAG
GACATCCAGCTCGGCCGCGATGGCAACGTGCTGGTAGTCACTGTAGTCGAGCGCCCGTCGATCTCCAGCATC
GAGATCGAGGGCAACAAGGCGATTTCCAAGGAAGACCTGCTCAAGGGCCTGAAACAGTCCGGCCTGGCCGAG
GGCGAGATCTTCCAGCGCGCCACCCTCGAAGGCGTGCGCAACGAGCTGCAACGCCAGTACGTGGCCCAGGGC
CGCTACTCGGCCGAGATCAACGCGGAAGTGATCCCGCAGCCGCGCAACCGCGTCGCGCTGAAGATCAACATC
AACGAAGGCACGGTCGCTGCGATTTCCCACATCAACGTGGTGGGCAACACCGTCTTCTCCGAAGAAGACCTG
ACCGACCTGTTCGAACTGAAGACCACCAACTGGCTGTCGTTCTTCAAGAACGACGACAAGTACGCCCGCGAA
AAGCTCTCCGGCGACCTTGAGCGCCTGCGCTCCTATTACCTGGACCGCGGCTACATCAACATGGATATCGCC
TCCACCCAGGTATCCATCACCCCGGACAAGAAGCACGTCTACATCACCGTCAACATCAACGAGGGTGAGAAG
TACACCATCCGCGACGTGAAGCTGACCGGCGACCTGAAGGTGCCGGAAGAGGAAGTGAAGCGCCTGCTGCTG
GTACAGAAGGGCCAGGTGTTCTCGCGCAAGGTGATGACCACCACCTCCGACCTGATCACCCGTCGCCTGGGC
AACGAGGGCTACACCTTCGCCAACGTCAACGGCGTGCCGGAAGCCCATGACGACGACAAGACCGTCTCGGTG
ACCTTCGTCGTCGACCCGGGCAAGCGCGCCTACGTCAACCGCATCAACTTCCGCGGCAACACCAAGACCGAA
GACGAAGTGCTGCGCCGCGAAATGCGCCAGATGGAGGGCGGCTGGGCCTCCACCTACCTGATCGACCAGTCC
AAGGCCCGTCTGGAGCGCCTCGGCTACTTCAAGGAAGTCAACGTCGAGACCCCGGCGGTTCCCGGCACCGAC
GACCAGGTCGACGTCAACTACAGCGTCGAAGAGCAACCGTCCGGCTCGATCACCGCCAGCGTCGGCTTCGCC
CAGAGCGCCGGCCTGATCCTCGGTGGCTCGATCAGCCAGAACAACTTCCTGGGTACCGGCAACAAGGTCAGC
ATCGGCCTGACCCGCAGCGAATACCAGACCCGCTACAACTTCGGCTTCGTCGACCCCTACTGGACCGTCGAC
GGCGTCAGCCTCGGCTACAACGCCTTCTACCGGAAGACCGACTACGACGAACTCGACGTCGACGTCGCCAGC
TACTCGGTGAACAGCCTGGGCGCCGGCATGAGCATCGGCTACCCGATCAGCGAGACCTCGCGCCTGACCTAT
GGGCTGAGCGTGCAGCGCGACCAGATCGACACCGGCCGCTACACCGTGGACGAGATCTACGACTTCCTCGAC
AAGGAAGGCGACAACTTCACCAACTTCAAGGCTTCCATCGGCTGGTCCGAATCGACCCTGAACAAGGGCGTG
CTGGCCACCCGTGGTCACTCGCAGAGCCTGACCCTGGAAACCACCCTGCCGGGCAGCGACCTGTCGTTCTAC
AAGATCGACTACCGCGGGCAGGTCTTTGCCCCGCTGACCGACAACTACACCATGCGCTTCCACACCGAGCTG
GGCTATGGCGACGGCTACGGATCCACCGAGCGCCTGCCGTTCTACGAGAACTACTACGCCGGCGGCTTCAAC
TCGGTGCGAGGCTTCAAGGACAGCACGCTGGGGCCTCGTAGTACTCCCTCTAGGGCTTACAAGGATGGGAAG
ATCATTCCTGGGCCTGATGAACGTGGTCGCTACACCGACCCGGACCAGGATCCCGAAGCCTTCGGTGGTAAC
ATCCTGATCACCGGCGGCGCCGAGCTGCTGTTCCCGCTGCCGTTCGTCAAGGACCAGCGCCAGTTGCGTACC
GTGCTGTTCTGGGACGTGGGTAGCACCTTCGATACCGACTGCCCGACCAATACCACCACCAACTGCGACGGC
ATCAAGACCGACAACCTCGCCAGTTCCGTGGGCGTCGGCCTGACCTGGATCACCGCGCTGGGCCCGCTGAGC
TTCAGCCTGGCGACGCCGATCAAGAAGCCGGACAACGCGGAAACCCAGGTCTTCCAGTTCTCCCTGGGCCAG
ACCTTCTGA |
Translation:
MKRFLLPALLSALMIAEVHAESFTVSDIRVNGLQRVSAGSVFAALPLNVGETIDDQALVQATRSLFKTGFFQ
DIQLGRDGNVLVVTVVERPSISSIEIEGNKAISKEDLLKGLKQSGLAEGEIFQRATLEGVRNELQRQYVAQG
RYSAEINAEVIPQPRNRVALKININEGTVAAISHINVVGNTVFSEEDLTDLFELKTTNWLSFFKNDDKYARE
KLSGDLERLRSYYLDRGYINMDIASTQVSITPDKKHVYITVNINEGEKYTIRDVKLTGDLKVPEEEVKRLLL
VQKGQVFSRKVMTTTSDLITRRLGNEGYTFANVNGVPEAHDDDKTVSVTFVVDPGKRAYVNRINFRGNTKTE
DEVLRREMRQMEGGWASTYLIDQSKARLERLGYFKEVNVETPAVPGTDDQVDVNYSVEEQPSGSITASVGFA
QSAGLILGGSISQNNFLGTGNKVSIGLTRSEYQTRYNFGFVDPYWTVDGVSLGYNAFYRKTDYDELDVDVAS
YSVNSLGAGMSIGYPISETSRLTYGLSVQRDQIDTGRYTVDEIYDFLDKEGDNFTNFKASIGWSESTLNKGV
LATRGHSQSLTLETTLPGSDLSFYKIDYRGQVFAPLTDNYTMRFHTELGYGDGYGSTERLPFYENYYAGGFN
SVRGFKDSTLGPRSTPSRAYKDGKIIPGPDERGRYTDPDQDPEAFGGNILITGGAELLFPLPFVKDQRQLRT
VLFWDVGSTFDTDCPTNTTTNCDGIKTDNLASSVGVGLTWITALGPLSFSLATPIKKPDNAETQVFQFSLGQ
TF* |
AnnotationID:211 | GeneID:201 |
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Modification Date/Time: |
2005-04-21 05:05:44 |
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GeneProduct: | putative outer membrane antigen |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (7) Cell wall / LPS / capsule |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN67220.1|AE016349_1 (AE016779) outer membrane protein, bacterial surface antigen family
[Pseudomonas putida KT2440]
Length = 786
Score = 1330 bits (3443), Expect = 0.0
Identities = 660/794 (83%), Positives = 723/794 (91%), Gaps = 8/794 (1%)
>gb|AAM36284.1| (AE011773) outer membrane antigen [Xanthomonas axonopodis pv. citri
str. 306]
Length = 788
Score = 663 bits (1710), Expect = 0.0
Identities = 353/814 (43%), Positives = 499/814 (61%), Gaps = 53/814 (6%)
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Structural Features: | COG4775, Outer membrane protein/protective antigen OMA87
[Cell envelope biogenesis, outer membrane]
CD-Length = 766 residues, 99.7% aligned
Score = 727 bits (1878), Expect = 0.0
Identities = 325/797 (40%), Positives = 452/797 (56%), Gaps = 36/797 (4%)
pfam01103, Bac_surface_Ag, Surface antigen.
CD-Length = 313 residues, 100.0% aligned
Score = 247 bits (633), Expect = 6e-66
Identities = 119/363 (32%), Positives = 163/363 (44%), Gaps = 55/363 (15%) |
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