ViewGene
Locus Name:
GeneID:
Location:

GeneID:1992
TrivialName: PA14_61600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61600
PAO1 Ortholog Locus:PA4657
Sequence Length:984
Protein Length:327
Start: 5496830
Stop: 5497813
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08044.1|AE004879_10 (AE004879) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 325/327 (99%), Positives = 326/327 (99%)
Sequence:
ATGAGCGTCCCCATCGCCATCATCGGTACTGGCATCGCCGGGCTTTCCGCCGCCCACGCATTGAGATCCGCC
GGCCAGACCGTACAACTGTTCGACAAGGGCCACGGCAGCGGCGGCCGCATGGCCAGCAAGCGCAGCGAGGCC
GGCACGCTGGACCTCGGCGCGCAATACTTCACCGCCCGCGACCGGCGCTTCCTCGACGCCTTGCAACACTGG
CGCGAGGAAGGCTGGGTGGACGAGTGGAAACCCGCTCTCTACCAATACCGCGACGGCCAGCTGAGCCCCTCC
CCGGACGAGCAGCCACGCTGGGTCGGCATCCCACGGATGAGTGCGATCACCCGCGCCCTGCTCACCGATCTG
CAAGTGGTCTTCTCCTGCCGCATCACCGAGGTCTTCCGCGGCAAGCAGCACTGGCACCTGCAGGACGCCGAG
GGACAGAACCACGGTCCGTTCAACCAGGTCCTGATCGCCATCCCCGCTCCCCAGGCCACGCCGCTGCTGGCC
AGCGTGCCGAAACTGGCGGCCACCGCCGCGAGCGTGGTCATGGAGCCGACCTGGGCGGTGGCGCTGGGCTTC
CGCGAGGTACTCGACACCCCGGTGCAGGGCTGCTTCGTGCACGGCAGTCCGATCGCCTGGCTGGCCTGCAAT
CGCAGCAAGCCGGGGCGCGACACCGCCCTCGACACCTGGGTGCTGCACGCCACCAGCCAGTGGAGCCGGCAG
CACATCGACATGGCCAAGGAGGACGTGGTCGAGCACCTGCGCTGCGCCTTCGCCGAAGTGATCGGCTGCGCC
GTGCCGGAAGCCGCCTTCAGCATCGCCCACCGCTGGCTCTATGCACGCCCGGCGGAGGCTCACCAATGGGGT
GCCCTCGGCGATCCCGACCTGGGCATCTACGCCTGCGGCGACTGGTGCTCCAGCGGCCGCGTCGAAGGCGCC
TGGCTCAGCGGCCAGGAAGCCGCGCGGCGCCTGCTGGAACATCTCTGA
Translation:
MSVPIAIIGTGIAGLSAAHALRSAGQTVQLFDKGHGSGGRMASKRSEAGTLDLGAQYFTARDRRFLDALQHW
REEGWVDEWKPALYQYRDGQLSPSPDEQPRWVGIPRMSAITRALLTDLQVVFSCRITEVFRGKQHWHLQDAE
GQNHGPFNQVLIAIPAPQATPLLASVPKLAATAASVVMEPTWAVALGFREVLDTPVQGCFVHGSPIAWLACN
RSKPGRDTALDTWVLHATSQWSRQHIDMAKEDVVEHLRCAFAEVIGCAVPEAAFSIAHRWLYARPAEAHQWG
ALGDPDLGIYACGDWCSSGRVEGAWLSGQEAARRLLEHL*
AnnotationID:2001GeneID:1992
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 06:06:20
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA4657
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3380
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54655.1| (AE016859) amine oxidase, flavin-containing [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 328

 Score =  490 bits (1261), Expect = e-138
 Identities = 232/327 (70%), Positives = 266/327 (81%)








 
Structural Features:
COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
CD-Length = 331 residues,  99.1% aligned
Score =  422 bits (1085), Expect = 4e-119
Identities = 154/329 (46%), Positives = 199/329 (60%), Gaps = 7/329 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3987




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21133




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37597




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1992_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1992
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3464
                           PA4657_tr
                           translation of PA4657
                           327
                           99.38
                           99.69
                           0
                           1748.0
     

     
     
106144
                           gb|AAG08044.1|AE004879_10
                           (AE004879) hypothetical protein PA4657 [Pseudomonas aeruginosa PAO1]
                           327
                           99.38
                           99.69
                           0
                           1748.0
     

     
     
106145
                           gb|AAN66367.1|AE016265_1
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           328
                           73.78
                           83.84
                           1
                           1343.0
     

     
     
106146
                           gb|AAO54655.1|
                           (AE016859) amine oxidase, flavin-containing [Pseudomonas syringae pv. tomato str. DC3000]
                           328
                           70.73
                           81.09
                           1
                           1261.0
     

     






      

          
GC ORFID: 44994How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4657Glimmer Score: 

          
Start: 4760510Stop: 4761493

          
Length: 984


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4657 translation of PA4657Homolog Bit Score 677.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5079 (ORF: BLASTX 489.0), t_PA4657 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGTCCCCATCGCCATCATCGGTACTGGCATCGCCGGGCTTTCCGCCGCCCACGCATTGAGATCCGCC 
GGCCAGACCGTACAACTGTTCGACAAGGGCCACGGCAGCGGCGGCCGCATGGCCAGCAAGCGCAGCGAGGCC 
GGCACGCTGGACCTCGGCGCGCAATACTTCACCGCCCGCGACCGGCGCTTCCTCGACGCCTTGCAACACTGG 
CGCGAGGAAGGCTGGGTGGACGAGTGGAAACCCGCTCTCTACCAATACCGCGACGGCCAGCTGAGCCCCTCC 
CCGGACGAGCAGCCACGCTGGGTCGGCATCCCACGGATGAGTGCGATCACCCGCGCCCTGCTCACCGATCTG 
CAAGTGGTCTTCTCCTGCCGCATCACCGAGGTCTTCCGCGGCAAGCAGCACTGGCACCTGCAGGACGCCGAG 
GGACAGAACCACGGTCCGTTCAACCAGGTCCTGATCGCCATCCCCGCTCCCCAGGCCACGCCGCTGCTGGCC 
AGCGTGCCGAAACTGGCGGCCACCGCCGCGAGCGTGGTCATGGAGCCGACCTGGGCGGTGGCGCTGGGCTTC 
CGCGAGGTACTCGACACCCCGGTGCAGGGCTGCTTCGTGCACGGCAGTCCGATCGCCTGGCTGGCCTGCAAT 
CGCAGCAAGCCGGGGCGCGACACCGCCCTCGACACCTGGGTGCTGCACGCCACCAGCCAGTGGAGCCGGCAG 
CACATCGACATGGCCAAGGAGGACGTGGTCGAGCACCTGCGCTGCGCCTTCGCCGAAGTGATCGGCTGCGCC 
GTGCCGGAAGCCGCCTTCAGCATCGCCCACCGCTGGCTCTATGCACGCCCGGCGGAGGCTCACCAATGGGGT 
GCCCTCGGCGATCCCGACCTGGGCATCTACGCCTGCGGCGACTGGTGCTCCAGCGGCCGCGTCGAAGGCGCC 
TGGCTCAGCGGCCAGGAAGCCGCGCGGCGCCTGCTGGAACATCTCTGA