ViewGene
Locus Name:
GeneID:
Location:

GeneID:1969
TrivialName: PA14_30350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30350
PAO1 Ortholog Locus:PA2610
Sequence Length:975
Protein Length:324
Start: 2630873
Stop: 2629899
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05998.1|AE004689_10 (AE004689) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 323/324 (99%), Positives = 324/324 (100%)
Sequence:
ATGGGACAGTTGATCGATGGCCGCTGGCACGACCAGTGGTATGACACACAGAAAGACGGCCGCTTCCAGCGC
GAAAACGCCCAGCGCCGCCATTGGCTGGGCGAGCCGGCGTTCCCCGCCGAGGGCGGGCGCTACCATCTCTAT
GTCTCGCTGGCCTGCCCCTGGGCCCATCGGACCCTGATCGTGCGCAAGCTGAAGGGGCTGGAGTCGCTGGTC
GATGTTTCGGTGGTCAGTTGGCTGATGCGCGAGAACGGCTGGACCTTCGACCCCGCCCACGGCTCCACCGGC
GATCGCCTCGACGGCCTGGCCTTTCTGCACCAGCGCTATACCCGCGACGACCCGCACTACAGCGGCCGGGTC
ACGGTGCCGCTGCTGTGGGACAAGCAGGCGCAGAAGATCGTCAACAACGAATCAGCCGATATCGTCCGCATC
TTCAACAGCGCCTTCGACGCCATCGGCGCCAACGCGCTGGACTTCTACCCGGAGCCGCTGCGCGAGGAGATC
GACCGCCTCAACGGACGCATCTATCCTGCGGTCAACAACGGCGTGTACCGTGCTGGCTTCGCCACTCGCCAG
GACGCCTACGAGGAGGCCTTCGTCCAGTTGTTCGAGGAGCTGGACTACCTGGAAGGCTTGCTCGGCGAACGC
CGCTACCTGGCCGGCGAATACCTGACCGAGGCCGATATCCGCCTGTTCACCACCCTGGTGCGCTTCGATGCG
GTGTACCACGGACACTTCAAGTGCAACCTGCGGCGCATCGAAGACTACCCGAATCTCTCCGGCTGGCTGCGC
GAACTGTACCAACGCCCGGGCATCGGCGAGACAGTGGACTTCGAACATATCAAGGGGCACTACTACGCCAGC
CACCGCACCATCAACCCGACCGGGATAGTACCGCTGGGCCCGCGTCTCGACCTGGCGCGCGCGCCAGGCCGG
GAACGACTTCCCGGCAAGGGCATCTGGGGAGAAGGCTGA
Translation:
MGQLIDGRWHDQWYDTQKDGRFQRENAQRRHWLGEPAFPAEGGRYHLYVSLACPWAHRTLIVRKLKGLESLV
DVSVVSWLMRENGWTFDPAHGSTGDRLDGLAFLHQRYTRDDPHYSGRVTVPLLWDKQAQKIVNNESADIVRI
FNSAFDAIGANALDFYPEPLREEIDRLNGRIYPAVNNGVYRAGFATRQDAYEEAFVQLFEELDYLEGLLGER
RYLAGEYLTEADIRLFTTLVRFDAVYHGHFKCNLRRIEDYPNLSGWLRELYQRPGIGETVDFEHIKGHYYAS
HRTINPTGIVPLGPRLDLARAPGRERLPGKGIWGEG*
AnnotationID:1978GeneID:1969
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 11:11:58
Gene Name:
Confidence Code:3
GeneProduct:putative glutathione S-transferase
Cell Localization:()
Synonyms:yqjG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0435
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56821.1| (AE016868) glutathione S-transferase domain protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 332

 Score =  508 bits (1307), Expect = e-143
 Identities = 240/332 (72%), Positives = 268/332 (80%), Gaps = 9/332 (2%)

>gb|AAN69592.1|AE016592_11 (AE016788) glutathione S-transferase domain protein [Pseudomonas
           putida KT2440]
          Length = 325

 Score =  491 bits (1264), Expect = e-138
 Identities = 233/321 (72%), Positives = 260/321 (80%), Gaps = 4/321 (1%)

>gb|AAN30467.1|AE014450_6 (AE014450) glutathione S-transferase domain protein [Brucella suis
           1330]
          Length = 327

 Score =  408 bits (1049), Expect = e-113
 Identities = 204/327 (62%), Positives = 235/327 (71%), Gaps = 10/327 (3%)








 
Structural Features:
COG0435, ECM4, Predicted glutathione S-transferase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 324 residues, 100.0% aligned
Score =  533 bits (1374), Expect = 1e-152
Identities = 223/324 (68%), Positives = 250/324 (77%), Gaps = 8/324 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3941




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21087




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33174




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1969_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1969
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3432
                           PA2610_tr
                           translation of PA2610
                           324
                           99.69
                           99.99
                           0
                           1759.0
     

     
     
105511
                           gb|AAG05998.1|AE004689_10
                           (AE004689) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           324
                           99.69
                           99.99
                           0
                           1759.0
     

     
     
105512
                           gb|AAO56821.1|
                           (AE016868) glutathione S-transferase domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           333
                           72.07
                           80.48
                           10
                           1313.0
     

     
     
105513
                           gb|AAN69592.1|AE016592_11
                           (AE016788) glutathione S-transferase domain protein [Pseudomonas putida KT2440]
                           330
                           70.60
                           78.78
                           11
                           1264.0
     

     
     
105514
                           gb|AAM35474.1|
                           (AE011686) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           334
                           63.17
                           74.55
                           20
                           1132.0
     

     






      

          
GC ORFID: 44971How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2610Glimmer Score: 

          
Start: 2323053Stop: 2324027

          
Length: 975


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2610 translation of PA2610Homolog Bit Score 682.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2747 (ORF: BLASTX 503.0), t_PA2610 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGACAGTTGATCGATGGCCGCTGGCACGACCAGTGGTATGACACACAGAAAGACGGCCGCTTCCAGCGC 
GAAAACGCCCAGCGCCGCCATTGGCTGGGCGAGCCGGCGTTCCCCGCCGAGGGCGGGCGCTACCATCTCTAT 
GTCTCGCTGGCCTGCCCCTGGGCCCATCGGACCCTGATCGTGCGCAAGCTGAAGGGGCTGGAGTCGCTGGTC 
GATGTTTCGGTGGTCAGTTGGCTGATGCGCGAGAACGGCTGGACCTTCGACCCCGCCCACGGCTCCACCGGC 
GATCGCCTCGACGGCCTGGCCTTTCTGCACCAGCGCTATACCCGCGACGACCCGCACTACAGCGGCCGGGTC 
ACGGTGCCGCTGCTGTGGGACAAGCAGGCGCAGAAGATCGTCAACAACGAATCAGCCGATATCGTCCGCATC 
TTCAACAGCGCCTTCGACGCCATCGGCGCCAACGCGCTGGACTTCTACCCGGAGCCGCTGCGCGAGGAGATC 
GACCGCCTCAACGGACGCATCTATCCTGCGGTCAACAACGGCGTGTACCGTGCTGGCTTCGCCACTCGCCAG 
GACGCCTACGAGGAGGCCTTCGTCCAGTTGTTCGAGGAGCTGGACTACCTGGAAGGCTTGCTCGGCGAACGC 
CGCTACCTGGCCGGCGAATACCTGACCGAGGCCGATATCCGCCTGTTCACCACCCTGGTGCGCTTCGATGCG 
GTGTACCACGGACACTTCAAGTGCAACCTGCGGCGCATCGAAGACTACCCGAATCTCTCCGGCTGGCTGCGC 
GAACTGTACCAACGCCCGGGCATCGGCGAGACAGTGGACTTCGAACATATCAAGGGGCACTACTACGCCAGC 
CACCGCACCATCAACCCGACCGGGATAGTACCGCTGGGCCCGCGTCTCGACCTGGCGCGCGCGCCAGGCCGG 
GAACGACTTCCCGGCAAGGGCATCTGGGGAGAAGGCTGA