ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1967

TrivialName: PA14_09290

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_09290

PAO1 Ortholog Locus: PA4224

Sequence Length: 1050

Protein Length: 349

Start: 795447

Stop: 796496

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07612.1|AE004839_5 (AE004839) pyochelin biosynthetic protein PchG [Pseudomonas aeruginosa PAO1] Identities = 347/349 (99%), Positives = 347/349 (99%)

Sequence:

ATGAGCGACGTCCGTTCCGTGGTGGTCGCCGGTTCCCGGTTCGGCCAGTTCTATGCCGCCGGCGTCGCCGCC
GATCCGCGCTTCGTCCTGCGCGGCATTCTTGGCCAGGGCAGCCGGCGTTCGCGGGCGTTGGCCGAGCGCCTC
GGGGTGGAGACCTGGTGCGAGGTCGAGGCGTTGCCGGACGATGTCCGCCTGGCCTGCGTCGCGGTCGGCGGC
GCGGCACGCGGCGAGCAGGGCCCGGCCCTGGCCGAGGCGCTGATGGCGCGTGGCATCGACGTGCTGATCGAG
CATCCGTTGCTGCCGCGCGAATGGCAGGACCTGCTGCGCAGCGCCGAGCGCCTGGGCCGGCGCTGCCTGCTC
AACACCTTCTATCCGCAGTTGCCGGCGGTGGCGCGTTTCATCGAGCTGGGCCGCCAGTTGCATCGCCGGCGC
GGCATCCGCCACCTGGACGCGGCCTGCGGGGTGCAGGTCGGTTTCGCCACCCTGGACATCCTCGCCGCGTTG
CTGGAGGGCGTCGGCCCCTGGTCGCTGGAGTCGCCCTCGAACGACCTGTCGGCGATGCGCGGGCTGTCCCTG
GTGTTGGCGGAAGTGCCGTTGAGCCTGCACGTGCTCAACGAACTGGCGGCCGCCGACGATGGGCGCATGACC
TTGTTGCAGCGCGTCAGCCTGACCACCGATCGCGGCACGCTGAGCCTGCTCAGCCCCCATGGCCCGTTGTTG
TGGACGCCTGCGGTGGCGGTACCGGCAGAGGATGACGACGGCCTGTTCGCGCTGTTCGACGAGATAGCCGGC
GAACCGCTGCCCAGCGCCCAGCTCTGGTATGCCGAACCGTGCAGCTGGGCCCAGGTGCACCAGCGCCTGTGG
CCGGCGGCGGCGGCCGAGGCGCTGGCGCTGCTCGCCGACGGCGACGAGGTGCGCCGGCGCAACCAGCGCAGC
CTGGAGGTCGCCGCCCTGTGGCAGCGGATCGGCGAGCGCCTTGGCTTCCCCGAGGCGCCGCCGGCGTCGCTG
GCGCCGGCGAGCCTGGAACAGGTGCTGGAGCACGCCTCGTGA

Translation:

MSDVRSVVVAGSRFGQFYAAGVAADPRFVLRGILGQGSRRSRALAERLGVETWCEVEALPDDVRLACVAVGG
AARGEQGPALAEALMARGIDVLIEHPLLPREWQDLLRSAERLGRRCLLNTFYPQLPAVARFIELGRQLHRRR
GIRHLDAACGVQVGFATLDILAALLEGVGPWSLESPSNDLSAMRGLSLVLAEVPLSLHVLNELAAADDGRMT
LLQRVSLTTDRGTLSLLSPHGPLLWTPAVAVPAEDDDGLFALFDEIAGEPLPSAQLWYAEPCSWAQVHQRLW
PAAAAEALALLADGDEVRRRNQRSLEVAALWQRIGERLGFPEAPPASLAPASLEQVLEHAS*

AnnotationID:1976 GeneID:1967

AnnotatorUID: diggins

Modification Date/Time: 2005-04-01 07:07:49

Gene Name: pchG

Confidence Code: 1

GeneProduct: pyochelin biosynthetic protein PchG

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (8) Central intermediary metabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG4693,pfam07414

Secondary Functional Category(ies): secondary metabolites, biosynthesis, transport, and catabolism

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG4693, PchG, Oxidoreductase (NAD-binding), involved in siderophore biosynthesis 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 361 residues, 100.0% aligned
Score =  432 bits (1112), Expect = 3e-122
Identities = 232/361 (64%), Positives = 262/361 (72%), Gaps = 12/361 (3%)

pfam07414, YbtU, Yersiniabactin synthetase thiazolinyl reductase component YbtU.
CD-Length = 343 residues, 100.0% aligned
Score =  409 bits (1052), Expect = 3e-115
Identities = 193/343 (56%), Positives = 225/343 (65%), Gaps = 7/343 (2%)

Genomic Context:

Comment:

ReferenceID:3937

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:21083

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36921

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1967_cdd.html

URL:

ReferenceID:37010

Author/Investigator(s): Reimmann C, Patel HM, Serino L, Barone M, Walsh CT, Haas D.

Title: Essential PchG-dependent reduction in pyochelin biosynthesis of Pseudomonas aeruginosa.

PubMed: 11208777

MedLine:

Source:

J Bacteriol. 2001 Feb;183(3):813-20.

Reference Type: Journal

Data:

URL:	`http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11208777`

Homologs By Global Alignment

Gene ID:1967

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3430 PA4224_tr translation of PA4224 349 99.42 99.42 0 1763.0

105507 gb|AAG07612.1|AE004839_5 (AE004839) pyochelin biosynthetic protein PchG [Pseudomonas aeruginosa PAO1] 349 99.42 99.42 0 1763.0

105508 gb|AAK01463.1| (AF074705) reductase [Pseudomonas aeruginosa] 349 99.42 99.42 0 1763.0

105509 gb|AAD17220.1| (AF116557) PchG [Pseudomonas aeruginosa] 349 99.14 99.14 0 1763.0

GC ORFID: `44969`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4224`	Glimmer Score:
Start: `4158490`	Stop: `4157441`
Length: `1050`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4224 translation of PA4224`	Homolog Bit Score `683.0`
Other Homologs: `t_PA4224 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCGACGTCCGTTCCGTGGTGGTCGCCGGTTCCCGGTTCGGCCAGTTCTATGCCGCCGGCGTCGCCGCC GATCCGCGCTTCGTCCTGCGCGGCATTCTTGGCCAGGGCAGCCGGCGTTCGCGGGCGTTGGCCGAGCGCCTC GGGGTGGAGACCTGGTGCGAGGTCGAGGCGTTGCCGGACGATGTCCGCCTGGCCTGCGTCGCGGTCGGCGGC GCGGCACGCGGCGAGCAGGGCCCGGCCCTGGCCGAGGCGCTGATGGCGCGTGGCATCGACGTGCTGATCGAG CATCCGTTGCTGCCGCGCGAATGGCAGGACCTGCTGCGCAGCGCCGAGCGCCTGGGCCGGCGCTGCCTGCTC AACACCTTCTATCCGCAGTTGCCGGCGGTGGCGCGTTTCATCGAGCTGGGCCGCCAGTTGCATCGCCGGCGC GGCATCCGCCACCTGGACGCGGCCTGCGGGGTGCAGGTCGGTTTCGCCACCCTGGACATCCTCGCCGCGTTG CTGGAGGGCGTCGGCCCCTGGTCGCTGGAGTCGCCCTCGAACGACCTGTCGGCGATGCGCGGGCTGTCCCTG GTGTTGGCGGAAGTGCCGTTGAGCCTGCACGTGCTCAACGAACTGGCGGCCGCCGACGATGGGCGCATGACC TTGTTGCAGCGCGTCAGCCTGACCACCGATCGCGGCACGCTGAGCCTGCTCAGCCCCCATGGCCCGTTGTTG TGGACGCCTGCGGTGGCGGTACCGGCAGAGGATGACGACGGCCTGTTCGCGCTGTTCGACGAGATAGCCGGC GAACCGCTGCCCAGCGCCCAGCTCTGGTATGCCGAACCGTGCAGCTGGGCCCAGGTGCACCAGCGCCTGTGG CCGGCGGCGGCGGCCGAGGCGCTGGCGCTGCTCGCCGACGGCGACGAGGTGCGCCGGCGCAACCAGCGCAGC CTGGAGGTCGCCGCCCTGTGGCAGCGGATCGGCGAGCGCCTTGGCTTCCCCGAGGCGCCGCCGGCGTCGCTG GCGCCGGCGAGCCTGGAACAGGTGCTGGAGCACGCCTCGTGA