ViewGene
Locus Name:
GeneID:
Location:

GeneID:1962
TrivialName: PA14_61280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61280
PAO1 Ortholog Locus:PA4631
Sequence Length:1026
Protein Length:341
Start: 5471338
Stop: 5470313
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08019.1|AE004877_6 (AE004877) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 341/341 (100%), Positives = 341/341 (100%)
Sequence:
GTGGACGAACAGCCACTCTCACGCCCTGGAGCTCATGTGAAATACGCCGTACTCGGAGCCACCGGCCTGCTG
GGACATCACGCCGCGCGCGCCATCAGGGCCGCCGGTCACGATCTGGTGCTGATCCACCGTCCTTCTTCGCAG
ATCCAGCGTCTCGCCTATCTGGAGCCCGAGTGCCGGGTCGCCGAGATGCTCGACCACGCCGGCCTGGAACGC
GCCCTGCGCGGCCTCGACGGGGTGATCTTCAGCGCCGGCTACTATCCTTCGCGGCCGCGCCGCTGGCAGGAG
GAAGTGGCCAGCGCGCTGGGCCAGACCAACCCGTTCTATGCCGCCTGCCTGCAGGCCAGGGTGCCGCGCATC
CTCTACGTCGGTTCGGCATATGCCATGCCCCGGCATCCCCAGGGACTACCGGGGCACGAGGGGTTGTTCTAC
GACAGCCTGCCGAGCGGCAAGAGTTCCTACGTGCTGTGCAAATGGGCGCTCGACGAGCAGGCCCGGGAGCAG
GCGCGCAACGGCCTGCCGGTGGTGATCGGGATCCCCGGCATGGTACTCGGCGAACTGGACATCGGCCCGACC
ACCGGACGCGTGATCACCGCCATCGGCAATGGCGAGATGACCCACTACGTCGCCGGCCAGCGTAACGTCATC
GATGCCGCCGAAGCCGGGCGCGGCCTGCTGATGGCCCTTGAGCGCGGGCGTATCGGCGAGCGCTACCTGCTG
ACCGGGCACAACCTGGAAATGGCCGACCTGACCCGGCGCATCGCCGAGCTGCTCGGCCAGCCTGCGCCGCAG
CCGATGTCGATGGCCATGGCTCGCGCGCTGGCCACCCTGGGCCGCTTGCGCTACCGGGTCAGCGGCCAGTTG
CCGCTGCTCGACGAAACCGCCATCGAGGTGATGGCTGGCGGGCAGTTCCTCGATGGACGCAAGGCCCGCGAG
GAACTCGGCTTCTTCTCCACCACCGCCCTCGACGACACCCTGCTGCGCGCCATCGACTGGTTCCGCGACAAC
GGCTATTTCAATGCCTAG
Translation:
MDEQPLSRPGAHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLER
ALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPGHEGLFY
DSLPSGKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVLGELDIGPTTGRVITAIGNGEMTHYVAGQRNVI
DAAEAGRGLLMALERGRIGERYLLTGHNLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQL
PLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWFRDNGYFNA*
AnnotationID:1971GeneID:1962
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 13:01:13
Gene Name:
Confidence Code:3
GeneProduct:putative epimerase
Cell Localization:()
Synonyms:PA4631
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0451,KOG1502
Secondary Functional Category(ies):cell envelope biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases 
[Cell envelope biogenesis, outer membrane / 
Carbohydrate transport and metabolism]
CD-Length = 314 residues,  99.7% aligned
Score = 97.3 bits (241), Expect = 5e-21
Identities = 77/340 (22%), Positives = 123/340 (36%), Gaps = 41/340 (12%)

KOG1502, Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
CD-Length = 327 residues,  97.9% aligned
Score = 81.1 bits (200), Expect = 3e-16
Identities = 70/348 (20%), Positives = 125/348 (35%), Gaps = 49/348 (14%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14467




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21073




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31591




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1962_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1962
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3424
                           PA4631_tr
                           translation of PA4631
                           341
                           99.99
                           99.99
                           0
                           1764.0
     

     
     
105477
                           gb|AAG08019.1|AE004877_6
                           (AE004877) hypothetical protein PA4631 [Pseudomonas aeruginosa PAO1]
                           341
                           99.70
                           99.99
                           0
                           1761.0
     

     






      

          
GC ORFID: 44964How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4631Glimmer Score: 

          
Start: 4735018Stop: 4733993

          
Length: 1026


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4631 translation of PA4631Homolog Bit Score 684.0

          
Other Homologs:  t_PA4631 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGACGAACAGCCACTCTCACGCCCTGGAGCTCATGTGAAATACGCCGTACTCGGAGCCACCGGCCTGCTG 
GGACATCACGCCGCGCGCGCCATCAGGGCCGCCGGTCACGATCTGGTGCTGATCCACCGTCCTTCTTCGCAG 
ATCCAGCGTCTCGCCTATCTGGAGCCCGAGTGCCGGGTCGCCGAGATGCTCGACCACGCCGGCCTGGAACGC 
GCCCTGCGCGGCCTCGACGGGGTGATCTTCAGCGCCGGCTACTATCCTTCGCGGCCGCGCCGCTGGCAGGAG 
GAAGTGGCCAGCGCGCTGGGCCAGACCAACCCGTTCTATGCCGCCTGCCTGCAGGCCAGGGTGCCGCGCATC 
CTCTACGTCGGTTCGGCATATGCCATGCCCCGGCATCCCCAGGGACTACCGGGGCACGAGGGGTTGTTCTAC 
GACAGCCTGCCGAGCGGCAAGAGTTCCTACGTGCTGTGCAAATGGGCGCTCGACGAGCAGGCCCGGGAGCAG 
GCGCGCAACGGCCTGCCGGTGGTGATCGGGATCCCCGGCATGGTACTCGGCGAACTGGACATCGGCCCGACC 
ACCGGACGCGTGATCACCGCCATCGGCAATGGCGAGATGACCCACTACGTCGCCGGCCAGCGTAACGTCATC 
GATGCCGCCGAAGCCGGGCGCGGCCTGCTGATGGCCCTTGAGCGCGGGCGTATCGGCGAGCGCTACCTGCTG 
ACCGGGCACAACCTGGAAATGGCCGACCTGACCCGGCGCATCGCCGAGCTGCTCGGCCAGCCTGCGCCGCAG 
CCGATGTCGATGGCCATGGCTCGCGCGCTGGCCACCCTGGGCCGCTTGCGCTACCGGGTCAGCGGCCAGTTG 
CCGCTGCTCGACGAAACCGCCATCGAGGTGATGGCTGGCGGGCAGTTCCTCGATGGACGCAAGGCCCGCGAG 
GAACTCGGCTTCTTCTCCACCACCGCCCTCGACGACACCCTGCTGCGCGCCATCGACTGGTTCCGCGACAAC 
GGCTATTTCAATGCCTAG