ViewGene
Locus Name:
GeneID:
Location:

GeneID:1936
TrivialName: PA14_57000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57000
PAO1 Ortholog Locus:
Sequence Length:1743
Protein Length:580
Start: 5078966
Stop: 5080708
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAA88233.1| (M15467) unknown protein [Mycobacterium tuberculosis]
Identities = 68/154 (44%), Positives = 80/154 (51%), Gaps = 7/154 (4%)
Sequence:
CTGCCCGCGCTGAGGAATAAAAAAAGCCCCGCCGAAGCGGGGCTTTTCCAACCACAGGGGCCGGTCGGCTTA
CATCATGCCGCCCATGCCGCCCATGCCGCCCATGTCAGGCATGCCGCCCATGGCCGGCTTGTCTTCCACGAT
CTCGGCAACCATGGCTTCGGTGGTGATCATCAGACCGCCGATGGAGGCCGCAGCCTGCAGAGCGGAACGAGT
GACCTTGGCCGGGTCCAGGATGCCCATCTCGATCATGTCGCCGTACACGCCGGTAGCAGCGTTGAAGCCGTA
GTTGCCGGAACCCTGCTTGACCTTGTCGACCACTACGCTCGGCTCGTCGCCGGCGTTGGCCACGATCTGGCG
CAGCGGCGATTCGACGGCGCGACGCAGCAGGGCGATACCGACGTTCTGCTCCTCGTTGTCACCCTTCAGGCC
TTCGATGGCTTGCAGGGCACGAACCAGGGCTACGCCGCCGCCGGGAACCACGCCCTCTTCCACCGCCGCACG
GGTAGCGTGCAGGGCGTCTTCGACGCGGGCTTTCTTCTCTTTCATCTCGACTTCGGTGGCAGCGCCTACCTT
GATCACGGCAACACCGCCGGCCAGCTTGGCCAGGCGCTCTTGCAGCTTCTCGCGGTCGTAGTCGGAAGTGGT
TTCCTCGATCTGCTTGCGGATCTGCAGGACGCGGGCTTCGATATCAGCCTGCACACCGGCGCCATCGATGAT
GGTGGTGTTTTCCTTGTTGATCACGACGCGCTTGGCGTTGCCCAGGTGCTCCAGGGTAGCGCCTTCCAGGCT
CAGGCCGACTTCTTCGCTGATCACGGTACCGCCGGTGAGGATGGCGATGTCCTGCAGCATGGCCTTGCGGCG
GTCGCCGAAGCCCGGAGCCTTGACGGCCGCGACCTTGACGATGCCACGCATGTTGTTCACCACCAGGGTGGC
CAGGGCTTCGCCCTCGACGTCCTCGGCGACGATCAGCAGCGGACGGCCGGCCTTGGCGACGGCTTCCAGCAC
CGGCAGCATTTCGCGGATGTTGGAGATCTTCTTGTCGACCAGCAGCAGCAGCGGGCTATCCAGCTCGGCAGC
CATGGTGTCCGGCTTGTTCACGAAGTAGGGGGACAGGTAGCCGCGATCGAACTGCATGCCTTCGACGACGGA
CAGTTCGTTTTCCAGGCCCGAGCCTTCCTCGACGGTGATCACGCCTTCTTTACCGACTTTTTCCATGGCTTC
GGCAATGATCTGGCCGATGGACTCGTCGGAGTTGGCGGAGATGGTGCCTACCTGGGCGATGGCCTTGGTGTC
GGCGCAGGGCTTGGCCAGCTCTTTCAGCTGGGCGACGATGGCCACGGTGGCCTTGTCGATGCCACGCTTCAG
GTCCATCGGGTTCATGCCGGCGGCAACGGCCTTCAGGCCTTCGTTGACGATGGCCTGGGCCAGGACGGTCGC
GGTGGTGGTGCCGTCACCGGCAGCATCGTTGGCCTTGGAGGCAACGTCTTTCACCAGTTGCGCGCCCATGTT
CTCGAACTTGTCTTTCAGCTCGATTTCCTTGGCGACGGAAACGCCATCCTTGGTGATGGTCGGAGCGCCGAA
CGACTTGTCCAGAACCACGTTGCGGCCTTTCGGGCCGAGGGTGGCCTTGACGGCATCGGCCAGCACGTTCAC
GCCGACCAGCATTTTCTTGCGAGCGGAATCGCCGAACTTAACTTCTTTGGCAGCCATGTTCTCTTTCCTCTA
AATCGAATTCGGTGA
Translation:
MPALRNKKSPAEAGLFQPQGPVGLHHAAHAAHAAHVRHAAHGRLVFHDLGNHGFGGDHQTADGGRSLQSGTS
DLGRVQDAHLDHVAVHAGSSVEAVVAGTLLDLVDHYARLVAGVGHDLAQRRFDGATQQGDTDVLLLVVTLQA
FDGLQGTNQGYAAAGNHALFHRRTGSVQGVFDAGFLLFHLDFGGSAYLDHGNTAGQLGQALLQLLAVVVGSG
FLDLLADLQDAGFDISLHTGAIDDGGVFLVDHDALGVAQVLQGSAFQAQADFFADHGTAGEDGDVLQHGLAA
VAEARSLDGRDLDDATHVVHHQGGQGFALDVLGDDQQRTAGLGDGFQHRQHFADVGDLLVDQQQQRAIQLGS
HGVRLVHEVGGQVAAIELHAFDDGQFVFQARAFLDGDHAFFTDFFHGFGNDLADGLVGVGGDGAYLGDGLGV
GAGLGQLFQLGDDGHGGLVDATLQVHRVHAGGNGLQAFVDDGLGQDGRGGGAVTGSIVGLGGNVFHQLRAHV
LELVFQLDFLGDGNAILGDGRSAERLVQNHVAAFRAEGGLDGIGQHVHADQHFLASGIAELNFFGSHVLFPL
NRIR*
AnnotationID:1945GeneID:1936
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 10:10:57
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:14459




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21022




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1936
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
104743
                           gb|AAA88233.1|
                           (M15467) unknown protein [Mycobacterium tuberculosis]
                           583
                           11.66
                           14.23
                           428
                           254.0
     

     






      

          
GC ORFID: 44938How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold12_revised_gene1986Glimmer Score: 

          
Start: 4342642Stop: 4344384

          
Length: 1743


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold12_revised_gene1986 related to: gi|1196511|gb|AAA88233.1| (M15467) unknown protein [Mycobacterium tuberculosis]Homolog Bit Score 691.0

          
Other Homologs:  

          
GC ORF Sequence

           
CTGCCCGCGCTGAGGAATAAAAAAAGCCCCGCCGAAGCGGGGCTTTTCCAACCACAGGGGCCGGTCGGCTTA 
CATCATGCCGCCCATGCCGCCCATGCCGCCCATGTCAGGCATGCCGCCCATGGCCGGCTTGTCTTCCACGAT 
CTCGGCAACCATGGCTTCGGTGGTGATCATCAGACCGCCGATGGAGGCCGCAGCCTGCAGAGCGGAACGAGT 
GACCTTGGCCGGGTCCAGGATGCCCATCTCGATCATGTCGCCGTACACGCCGGTAGCAGCGTTGAAGCCGTA 
GTTGCCGGAACCCTGCTTGACCTTGTCGACCACTACGCTCGGCTCGTCGCCGGCGTTGGCCACGATCTGGCG 
CAGCGGCGATTCGACGGCGCGACGCAGCAGGGCGATACCGACGTTCTGCTCCTCGTTGTCACCCTTCAGGCC 
TTCGATGGCTTGCAGGGCACGAACCAGGGCTACGCCGCCGCCGGGAACCACGCCCTCTTCCACCGCCGCACG 
GGTAGCGTGCAGGGCGTCTTCGACGCGGGCTTTCTTCTCTTTCATCTCGACTTCGGTGGCAGCGCCTACCTT 
GATCACGGCAACACCGCCGGCCAGCTTGGCCAGGCGCTCTTGCAGCTTCTCGCGGTCGTAGTCGGAAGTGGT 
TTCCTCGATCTGCTTGCGGATCTGCAGGACGCGGGCTTCGATATCAGCCTGCACACCGGCGCCATCGATGAT 
GGTGGTGTTTTCCTTGTTGATCACGACGCGCTTGGCGTTGCCCAGGTGCTCCAGGGTAGCGCCTTCCAGGCT 
CAGGCCGACTTCTTCGCTGATCACGGTACCGCCGGTGAGGATGGCGATGTCCTGCAGCATGGCCTTGCGGCG 
GTCGCCGAAGCCCGGAGCCTTGACGGCCGCGACCTTGACGATGCCACGCATGTTGTTCACCACCAGGGTGGC 
CAGGGCTTCGCCCTCGACGTCCTCGGCGACGATCAGCAGCGGACGGCCGGCCTTGGCGACGGCTTCCAGCAC 
CGGCAGCATTTCGCGGATGTTGGAGATCTTCTTGTCGACCAGCAGCAGCAGCGGGCTATCCAGCTCGGCAGC 
CATGGTGTCCGGCTTGTTCACGAAGTAGGGGGACAGGTAGCCGCGATCGAACTGCATGCCTTCGACGACGGA 
CAGTTCGTTTTCCAGGCCCGAGCCTTCCTCGACGGTGATCACGCCTTCTTTACCGACTTTTTCCATGGCTTC 
GGCAATGATCTGGCCGATGGACTCGTCGGAGTTGGCGGAGATGGTGCCTACCTGGGCGATGGCCTTGGTGTC 
GGCGCAGGGCTTGGCCAGCTCTTTCAGCTGGGCGACGATGGCCACGGTGGCCTTGTCGATGCCACGCTTCAG 
GTCCATCGGGTTCATGCCGGCGGCAACGGCCTTCAGGCCTTCGTTGACGATGGCCTGGGCCAGGACGGTCGC 
GGTGGTGGTGCCGTCACCGGCAGCATCGTTGGCCTTGGAGGCAACGTCTTTCACCAGTTGCGCGCCCATGTT 
CTCGAACTTGTCTTTCAGCTCGATTTCCTTGGCGACGGAAACGCCATCCTTGGTGATGGTCGGAGCGCCGAA 
CGACTTGTCCAGAACCACGTTGCGGCCTTTCGGGCCGAGGGTGGCCTTGACGGCATCGGCCAGCACGTTCAC 
GCCGACCAGCATTTTCTTGCGAGCGGAATCGCCGAACTTAACTTCTTTGGCAGCCATGTTCTCTTTCCTCTA 
AATCGAATTCGGTGA