ViewGene
Locus Name:
GeneID:
Location:

GeneID:1917
TrivialName: PA14_37870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37870
PAO1 Ortholog Locus:PA2059
Sequence Length:1074
Protein Length:357
Start: 3378571
Stop: 3377498
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05447.1|AE004632_6 (AE004632) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 353/357 (98%), Positives = 357/357 (100%)
Sequence:
ATGGGCGGCTACCTGTTGCGCCGCCTGGCGCTGATCCTGCCGACCCTGCTGGGCATCCTGCTGATCAACTTC
GCCATCGTCCAGGCCGCACCCGGCGGGCCGGTGGAACAGGCCATCGCGCGCCTGCAGGGCGTCGACGGCGGC
GGCCCGCTGGGGCGTGGCGGGGAGGGCGGGCATGGCGCGCTGGAACCGCAGCGCCACGGCGAGACCGGCATC
GACCCGCAGCTGGTGGCCGCCCTGGAGCGCCAGTACGGCTTCGACAAGCCGCCGCTGCAACGGCTCTGGCTG
ATGCTGTCGAGCTACGCCCGGCTGGATTTCGGCGAGAGCTTCTACCGCGACGCGCGGGTCGTCGACCTGATC
GCCGAGAAGCTGCCGGTCTCGCTGTCCCTGGGCTTGTGGGCGACGTTGATCACCTACCTGGTGTCGATTCCC
CTGGGGGTGGCCAAGGCGGTGCGCCACGGCAGCGCCTTCGACCTGTGGAGCAGCGCGTTGGTGGTGGTCGGC
TATGCGGTGCCCGGCTTCCTCTTCGCCATCGTCCTGATCGTGCTGTTCGCCGGCGGCAGCTACCTGGACTGG
TTCCCCCTGCGCGGCCTGGCTTCCGAGGGCGCCGAGCGCCTCGGCCCGTTGGCGCGTTTCGCCGATTACCTC
TGGCACCTGGCGCTGCCGGTGGGTTCGCTGGTGGTCGGCGGTTTCGCCAGCCTGACCCTGCTGACCAAGAAC
AGCTTCCTCGACGAGATATCCAGGCAGTACGTCGCCACCGCTCGCGCCAAGGGCCTCAGCGAGCGCCGGGTG
CTCTACGGCCATGTGTTCCGCAACGCCATGTTGCTGGTGGTGGCCGGGCTGCCGGCGGCGCTGGTCTCGGTG
TTCTTCACCGGGTCGCTGCTGATCGAGGTGCTGTTCTCCCTCGACGGCCTCGGCCTGATGGGCTACGAAGCG
GCGCTCGGCCGCGACTACCCGGTGGTGTTCGGCAGCCTGTTCATCTTCACCCTGCTCGGGTTGCTGGTGAAG
CTGGCCGGCGACCTGGCCTACAGCCTGGTCGACCCGCGCATCGACTTCGCCGCGAGGAAACAGTGA
Translation:
MGGYLLRRLALILPTLLGILLINFAIVQAAPGGPVEQAIARLQGVDGGGPLGRGGEGGHGALEPQRHGETGI
DPQLVAALERQYGFDKPPLQRLWLMLSSYARLDFGESFYRDARVVDLIAEKLPVSLSLGLWATLITYLVSIP
LGVAKAVRHGSAFDLWSSALVVVGYAVPGFLFAIVLIVLFAGGSYLDWFPLRGLASEGAERLGPLARFADYL
WHLALPVGSLVVGGFASLTLLTKNSFLDEISRQYVATARAKGLSERRVLYGHVFRNAMLLVVAGLPAALVSV
FFTGSLLIEVLFSLDGLGLMGYEAALGRDYPVVFGSLFIFTLLGLLVKLAGDLAYSLVDPRIDFAARKQ*
AnnotationID:1926GeneID:1917
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:45
Gene Name:
Confidence Code:3
GeneProduct:putative peptide ABC transporter, permease protein
Cell Localization:()
Synonyms:PA2059
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4174,COG0601
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68685.1|AE016497_10 (AE016785) ABC transporter, permease protein, putative [Pseudomonas
           putida KT2440]
          Length = 352

 Score =  506 bits (1304), Expect = e-143
 Identities = 252/355 (70%), Positives = 295/355 (83%), Gaps = 5/355 (1%)

>dbj|BAB51935.1| (AP003006) peptide ABC transporter, permease protein [Mesorhizobium
           loti]
          Length = 364

 Score =  451 bits (1161), Expect = e-126
 Identities = 217/362 (59%), Positives = 281/362 (77%), Gaps = 7/362 (1%)

>gb|AAC75239.1| (AE000307) putative transport system permease protein [Escherichia
           coli K12]
          Length = 364

 Score =  439 bits (1129), Expect = e-122
 Identities = 216/364 (59%), Positives = 278/364 (76%), Gaps = 9/364 (2%)








 
Structural Features:
COG4174, COG4174, ABC-type uncharacterized transport system, permease component 
CD-Length = 364 residues,  99.7% aligned
Score =  546 bits (1409), Expect = 1e-156
Identities = 250/363 (68%), Positives = 299/363 (82%), Gaps = 8/363 (2%)

COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel 
transport systems, permease components 
[Amino acid transport and metabolism / Inorganic ion transport and metabolism]
CD-Length = 317 residues,  98.7% aligned
Score =  242 bits (619), Expect = 6e-65
Identities = 121/350 (34%), Positives = 180/350 (51%), Gaps = 37/350 (10%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3837




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20984




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32641




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1917_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1917
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3371
                           PA2059_tr
                           translation of PA2059
                           357
                           98.87
                           99.99
                           0
                           1791.0
     

     
     
104363
                           gb|AAG05447.1|AE004632_6
                           (AE004632) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           357
                           98.87
                           99.99
                           0
                           1791.0
     

     
     
104364
                           gb|AAN68685.1|AE016497_10
                           (AE016785) ABC transporter, permease protein, putative [Pseudomonas putida KT2440]
                           361
                           69.80
                           81.99
                           13
                           1309.0
     

     
     
104366
                           gb|AAO56520.1|
                           (AE016866) peptide ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           357
                           69.46
                           82.35
                           3
                           1296.0
     

     
     
104367
                           gb|AAO53812.1|
                           (AE016856) peptide ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           358
                           68.99
                           80.72
                           4
                           1282.0
     

     






      

          
GC ORFID: 44919How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2059Glimmer Score: 

          
Start: 1575342Stop: 1576415

          
Length: 1074


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2059 translation of PA2059Homolog Bit Score 694.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6044 (ORF: BLASTX 500.0), psyr_15may02_Scaffold1_revised_gene636 (ORF: BLASTX 496.0), t_PA1809 (ORF: BLASTX 494.0), psyr_15may02_Scaffold2_revised_gene3081 (ORF: BLASTX 492.0), t_PA2059 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCGGCTACCTGTTGCGCCGCCTGGCGCTGATCCTGCCGACCCTGCTGGGCATCCTGCTGATCAACTTC 
GCCATCGTCCAGGCCGCACCCGGCGGGCCGGTGGAACAGGCCATCGCGCGCCTGCAGGGCGTCGACGGCGGC 
GGCCCGCTGGGGCGTGGCGGGGAGGGCGGGCATGGCGCGCTGGAACCGCAGCGCCACGGCGAGACCGGCATC 
GACCCGCAGCTGGTGGCCGCCCTGGAGCGCCAGTACGGCTTCGACAAGCCGCCGCTGCAACGGCTCTGGCTG 
ATGCTGTCGAGCTACGCCCGGCTGGATTTCGGCGAGAGCTTCTACCGCGACGCGCGGGTCGTCGACCTGATC 
GCCGAGAAGCTGCCGGTCTCGCTGTCCCTGGGCTTGTGGGCGACGTTGATCACCTACCTGGTGTCGATTCCC 
CTGGGGGTGGCCAAGGCGGTGCGCCACGGCAGCGCCTTCGACCTGTGGAGCAGCGCGTTGGTGGTGGTCGGC 
TATGCGGTGCCCGGCTTCCTCTTCGCCATCGTCCTGATCGTGCTGTTCGCCGGCGGCAGCTACCTGGACTGG 
TTCCCCCTGCGCGGCCTGGCTTCCGAGGGCGCCGAGCGCCTCGGCCCGTTGGCGCGTTTCGCCGATTACCTC 
TGGCACCTGGCGCTGCCGGTGGGTTCGCTGGTGGTCGGCGGTTTCGCCAGCCTGACCCTGCTGACCAAGAAC 
AGCTTCCTCGACGAGATATCCAGGCAGTACGTCGCCACCGCTCGCGCCAAGGGCCTCAGCGAGCGCCGGGTG 
CTCTACGGCCATGTGTTCCGCAACGCCATGTTGCTGGTGGTGGCCGGGCTGCCGGCGGCGCTGGTCTCGGTG 
TTCTTCACCGGGTCGCTGCTGATCGAGGTGCTGTTCTCCCTCGACGGCCTCGGCCTGATGGGCTACGAAGCG 
GCGCTCGGCCGCGACTACCCGGTGGTGTTCGGCAGCCTGTTCATCTTCACCCTGCTCGGGTTGCTGGTGAAG 
CTGGCCGGCGACCTGGCCTACAGCCTGGTCGACCCGCGCATCGACTTCGCCGCGAGGAAACAGTGA