ViewGene
Locus Name:
GeneID:
Location:

GeneID:191
TrivialName: PA14_02410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02410
PAO1 Ortholog Locus:PA0192
Sequence Length:2373
Protein Length:790
Start: 215908
Stop: 218280
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03582.1|AE004457_3 (AE004457) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
Identities = 784/790 (99%), Positives = 788/790 (99%)
Sequence:
ATGAAGTATCACTACCGCTTGCCGCTCCGCCGAACGCCGCCCGGCGGCTCCGACTACGCCCTGGCCCTGCTG
CTCGCCCTCGGCGGTGCGTTGCCGGCCAGTGCCGCCGATGCTCCCGCGCCCGCCGAGGAGGCGCCGCCGCTG
GCCGGCAGCGCACCGGCCAAGGCCGATACGGCCCTGGGCAAGGTTACCGTCACCGCGCGTCGCCGCGAGGAG
GATTCGCAGAAGGTACCGACGCCGATCACCGTGCTCGGTGGCGAGACTCTCGAGGCCCAGCGCATCTCCCGG
GTGCAGGACCTGCAGCAGGTGCTGCCCAGCGTCAATGTCGCCTACATCCATGCGCGGCAGTCGAGCGTCGCC
GTGCGCGGCATCGGCAACAACCCCGCCAGCGACGGCCTGGAAGGCAGCGCCGGGATCTACCTCGACAACGTC
TACCTGGGGCGGCCGGGAATGGCCGTGTTCGACCTGCTGGACATCGAGCAACTGGAGCTGCTGCGCGGTCCG
CAGGGCACCCTGTTCGGCAAGAACACCACCGCCGGGGTGCTGAACATCAGCACCCGCGCGCCGACCTTCACT
ACCGAGCGCACCGTCGAGGTCTCCGGCGGGCAGGACGGCTACTTCCAGGGCCGCGGCACGGTTTCCGGGCCG
CTCGGCGAAACCCTCGCCGGACGCCTCTCGGCCTATCGCACCCGCGACGACGGCTACATCAAGAACATCCAC
GACGACAACTATCTCAACGGCGGCGAGCGCCAGGGCGCGCGCGGGCAATTGCTGTTCGAGCCGAACGAGGAC
TTCAGCCTGCGCTGGATCGCCGACTACAACGAGGAGGATTCGAGCAACGGCAGCATGGTGGTCTACGGCGCC
GCCGAGCGTTTCTGGCAGCGCGCCGCGCTGGTCGGCGCTTCGCCGTTGCGCGATCCGCAGCGCAAGAAGGTC
AACATCAACGGCCGCCAGCACGTCAGCGTGCACCAGGGCGGCAGCTCGCTGGAGGCCAACTGGAACCTCGCC
GGCGGCTACCGCCTGACCTCCATCAGCGCCTACCGCTACTGGCACTTCACCCCGGCCAACGACGAGCAACTG
AACGTCTCGGCGATCAACGACACCGGGGTGGAAGTGCACGACCGGCAGTTCTCCCAGGAGATCCGCCTGGCC
TCGCCCACCGGCGGTGCCTTCGACTACGTGGTGGGCGCCTACGCGTTCAGGCAGAACCTCGGCAACAAGACC
TTCACCTCCTACGGACCGTTGGCCGACCTGTACCTGCTCGGCGCCAATCTCGGCGCACTGAACGACACCTAC
TCGAAGGCCAACGGCAAGATCGAGACCGACAGCTTCGCGCTGTTCGCCCAGGGCACCTGGCACCTCAGCGAA
CGCCTGGACTTCACCGCCGGCCTGCGCGGTACCTACGAGGAGAAGAACGCCAAGGTCGAGCGCTTCGCTCCG
CTGGGCGGCGCGGCGGTCGGCGGGGTCGGCGCGGCGGTGCGCAACGGCCAGCTCGGTGCCTACGATTCCGGC
GATCTCAGCCAGTACAACTTCGCCCCTTCGGCGTTGCTCAGCCTCAGCTACCAGTTCAGCGACGACCTGCTC
GGCTACGCCAGCCTGTCCCACGGCGAGAAGTCCGGCGGGGTCAACCTGGCGGTGGGCAGCGCGCCGAGCGCC
GGCGCCGATTCGCTGCTGGTCGGACCGGAGCGCGCCAACGACGCCGAGCTGGGCCTGAAGAGCACGCTCTTC
GACCGGCGCCTGCTGCTCAACGCCAACCTGTTCTGGACCGGCATCCACGGCTACCAGGCCACCACCCTGTAC
CAGGCGCCGGGCTCGACGCAGTTGGTGCAGGTGCTGGCCAACGCCGGCAGCGTGCGCTCGCGCGGCCTGGAA
TTCGAGGCCACCGCGCTGCCGTTGCGCGGCCTGACCCTGAACTTCAACGGCTCTTACAACGACGTCACCTAC
CTGTCGTTCAAGGATGCCCCGTGCCCTGCGGAAGTCAGCACCCGGCCCGGCGCGCCGAGCAGTTGCGACCTC
AGCGGGCAGCGCGTGGTCGGCGCCTCGAAATGGATCGCCAACCTCAATGGCGAATACCAGTGGCGCCTCGAC
GACCGCTTCCAACCCTACGTCAGCGCCAGCTACGCCTACCGCTCCGCGGCCGAGGGCACGCTGGACAACTCC
GACCTTTCGAAGATCGACGGCTACGCCCTGGTGAACCTCGCCGCCGGCCTGCGCAGCGATCTCGGCGACGGC
CAACTGGACACCTCGGTATGGCTGAAGAACGCCTTCGACAAGGACTACTACCTGAGCGCCTTCGCCAGCATC
AACGGCTCCTACACCGCATCGGTGGGACAGCCGCGCACGCTCGGCGTATCGCTGCGCTACGACTTCTGA
Translation:
MKYHYRLPLRRTPPGGSDYALALLLALGGALPASAADAPAPAEEAPPLAGSAPAKADTALGKVTVTARRREE
DSQKVPTPITVLGGETLEAQRISRVQDLQQVLPSVNVAYIHARQSSVAVRGIGNNPASDGLEGSAGIYLDNV
YLGRPGMAVFDLLDIEQLELLRGPQGTLFGKNTTAGVLNISTRAPTFTTERTVEVSGGQDGYFQGRGTVSGP
LGETLAGRLSAYRTRDDGYIKNIHDDNYLNGGERQGARGQLLFEPNEDFSLRWIADYNEEDSSNGSMVVYGA
AERFWQRAALVGASPLRDPQRKKVNINGRQHVSVHQGGSSLEANWNLAGGYRLTSISAYRYWHFTPANDEQL
NVSAINDTGVEVHDRQFSQEIRLASPTGGAFDYVVGAYAFRQNLGNKTFTSYGPLADLYLLGANLGALNDTY
SKANGKIETDSFALFAQGTWHLSERLDFTAGLRGTYEEKNAKVERFAPLGGAAVGGVGAAVRNGQLGAYDSG
DLSQYNFAPSALLSLSYQFSDDLLGYASLSHGEKSGGVNLAVGSAPSAGADSLLVGPERANDAELGLKSTLF
DRRLLLNANLFWTGIHGYQATTLYQAPGSTQLVQVLANAGSVRSRGLEFEATALPLRGLTLNFNGSYNDVTY
LSFKDAPCPAEVSTRPGAPSSCDLSGQRVVGASKWIANLNGEYQWRLDDRFQPYVSASYAYRSAAEGTLDNS
DLSKIDGYALVNLAAGLRSDLGDGQLDTSVWLKNAFDKDYYLSAFASINGSYTASVGQPRTLGVSLRYDF*
AnnotationID:201GeneID:191
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 09:09:57
Gene Name:
Confidence Code:3
GeneProduct:putative TonB-dependent receptor
Cell Localization:()
Synonyms:PA0192
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative outer membrane receptor protein
Functional Category Confidence Code:5
COGs:COG1629,pfam00593
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues,  98.4% aligned
Score =  177 bits (448), Expect = 5e-45
Identities = 189/804 (23%), Positives = 282/804 (35%), Gaps = 81/804 (10%)

pfam00593, TonB_dep_Rec, TonB dependent receptor. 
CD-Length = 712 residues, 100.0% aligned
Score =  150 bits (379), Expect = 6e-37
Identities = 164/767 (21%), Positives = 249/767 (32%), Gaps = 106/767 (13%)






   
Genomic Context:






   
Comment:


















    ReferenceID:385




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17527




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33560




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:191_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:191
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
330
                           PA0192_tr
                           translation of PA0192
                           790
                           99.24
                           99.74
                           0
                           4055.0
     

     
     
21220
                           gb|AAG03582.1|AE004457_3
                           (AE004457) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
                           790
                           99.24
                           99.74
                           0
                           4055.0
     

     
     
331
                           PA2335_tr
                           translation of PA2335
                           804
                           66.04
                           77.98
                           29
                           2708.0
     

     
     
21221
                           gb|AAG05723.1|AE004659_9
                           (AE004659) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
                           804
                           66.04
                           77.98
                           29
                           2708.0
     

     
     
21222
                           gb|AAF02095.1|
                           (AF126201) SftP [Pseudomonas putida]
                           800
                           61.50
                           74.62
                           32
                           2489.0
     

     






      

          
GC ORFID: 43193How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0192Glimmer Score: 

          
Start: 6017247Stop: 6019619

          
Length: 2373


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0192 translation of PA0192Homolog Bit Score 1566.0

          
Other Homologs:  t_PA2335 (ORF: BLASTX 1042.0), t_PA0192 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGTATCACTACCGCTTGCCGCTCCGCCGAACGCCGCCCGGCGGCTCCGACTACGCCCTGGCCCTGCTG 
CTCGCCCTCGGCGGTGCGTTGCCGGCCAGTGCCGCCGATGCTCCCGCGCCCGCCGAGGAGGCGCCGCCGCTG 
GCCGGCAGCGCACCGGCCAAGGCCGATACGGCCCTGGGCAAGGTTACCGTCACCGCGCGTCGCCGCGAGGAG 
GATTCGCAGAAGGTACCGACGCCGATCACCGTGCTCGGTGGCGAGACTCTCGAGGCCCAGCGCATCTCCCGG 
GTGCAGGACCTGCAGCAGGTGCTGCCCAGCGTCAATGTCGCCTACATCCATGCGCGGCAGTCGAGCGTCGCC 
GTGCGCGGCATCGGCAACAACCCCGCCAGCGACGGCCTGGAAGGCAGCGCCGGGATCTACCTCGACAACGTC 
TACCTGGGGCGGCCGGGAATGGCCGTGTTCGACCTGCTGGACATCGAGCAACTGGAGCTGCTGCGCGGTCCG 
CAGGGCACCCTGTTCGGCAAGAACACCACCGCCGGGGTGCTGAACATCAGCACCCGCGCGCCGACCTTCACT 
ACCGAGCGCACCGTCGAGGTCTCCGGCGGGCAGGACGGCTACTTCCAGGGCCGCGGCACGGTTTCCGGGCCG 
CTCGGCGAAACCCTCGCCGGACGCCTCTCGGCCTATCGCACCCGCGACGACGGCTACATCAAGAACATCCAC 
GACGACAACTATCTCAACGGCGGCGAGCGCCAGGGCGCGCGCGGGCAATTGCTGTTCGAGCCGAACGAGGAC 
TTCAGCCTGCGCTGGATCGCCGACTACAACGAGGAGGATTCGAGCAACGGCAGCATGGTGGTCTACGGCGCC 
GCCGAGCGTTTCTGGCAGCGCGCCGCGCTGGTCGGCGCTTCGCCGTTGCGCGATCCGCAGCGCAAGAAGGTC 
AACATCAACGGCCGCCAGCACGTCAGCGTGCACCAGGGCGGCAGCTCGCTGGAGGCCAACTGGAACCTCGCC 
GGCGGCTACCGCCTGACCTCCATCAGCGCCTACCGCTACTGGCACTTCACCCCGGCCAACGACGAGCAACTG 
AACGTCTCGGCGATCAACGACACCGGGGTGGAAGTGCACGACCGGCAGTTCTCCCAGGAGATCCGCCTGGCC 
TCGCCCACCGGCGGTGCCTTCGACTACGTGGTGGGCGCCTACGCGTTCAGGCAGAACCTCGGCAACAAGACC 
TTCACCTCCTACGGACCGTTGGCCGACCTGTACCTGCTCGGCGCCAATCTCGGCGCACTGAACGACACCTAC 
TCGAAGGCCAACGGCAAGATCGAGACCGACAGCTTCGCGCTGTTCGCCCAGGGCACCTGGCACCTCAGCGAA 
CGCCTGGACTTCACCGCCGGCCTGCGCGGTACCTACGAGGAGAAGAACGCCAAGGTCGAGCGCTTCGCTCCG 
CTGGGCGGCGCGGCGGTCGGCGGGGTCGGCGCGGCGGTGCGCAACGGCCAGCTCGGTGCCTACGATTCCGGC 
GATCTCAGCCAGTACAACTTCGCCCCTTCGGCGTTGCTCAGCCTCAGCTACCAGTTCAGCGACGACCTGCTC 
GGCTACGCCAGCCTGTCCCACGGCGAGAAGTCCGGCGGGGTCAACCTGGCGGTGGGCAGCGCGCCGAGCGCC 
GGCGCCGATTCGCTGCTGGTCGGACCGGAGCGCGCCAACGACGCCGAGCTGGGCCTGAAGAGCACGCTCTTC 
GACCGGCGCCTGCTGCTCAACGCCAACCTGTTCTGGACCGGCATCCACGGCTACCAGGCCACCACCCTGTAC 
CAGGCGCCGGGCTCGACGCAGTTGGTGCAGGTGCTGGCCAACGCCGGCAGCGTGCGCTCGCGCGGCCTGGAA 
TTCGAGGCCACCGCGCTGCCGTTGCGCGGCCTGACCCTGAACTTCAACGGCTCTTACAACGACGTCACCTAC 
CTGTCGTTCAAGGATGCCCCGTGCCCTGCGGAAGTCAGCACCCGGCCCGGCGCGCCGAGCAGTTGCGACCTC 
AGCGGGCAGCGCGTGGTCGGCGCCTCGAAATGGATCGCCAACCTCAATGGCGAATACCAGTGGCGCCTCGAC 
GACCGCTTCCAACCCTACGTCAGCGCCAGCTACGCCTACCGCTCCGCGGCCGAGGGCACGCTGGACAACTCC 
GACCTTTCGAAGATCGACGGCTACGCCCTGGTGAACCTCGCCGCCGGCCTGCGCAGCGATCTCGGCGACGGC 
CAACTGGACACCTCGGTATGGCTGAAGAACGCCTTCGACAAGGACTACTACCTGAGCGCCTTCGCCAGCATC 
AACGGCTCCTACACCGCATCGGTGGGACAGCCGCGCACGCTCGGCGTATCGCTGCGCTACGACTTCTGA