ViewGene
Locus Name:
GeneID:
Location:

GeneID:1903
TrivialName: PA14_14510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14510
PAO1 Ortholog Locus:PA3827
Sequence Length:1068
Protein Length:355
Start: 1240306
Stop: 1241373
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07214.1|AE004800_3 (AE004800) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 355/355 (100%), Positives = 355/355 (100%)
Sequence:
ATGGTTAAGCTCGATCGTTACATCGGTGTCACCGTCTTCGTCGCGATCCTCGCGGTGCTCGGGGTGATCCTC
GGCCTGGCGCTGCTGTTCGCCTTCATCGACGAACTCAACGACATCAGCGCCAGCTACGGCATTGGCGATGCC
CTGCGCTTCATCTTCCTCACCGCGCCACGGCGCGCCTACGACATGCTGCCGATGGCGGCGCTGATCGGCTGC
CTGGTCGGCCTCGGCACCCTGGCCAGCAACAGCGAACTGACCATCATGCGCGCGGCCGGGGTATCCCTGTCG
CGGATCGTCTGGGCGGTGATGAAACCGATGCTGGTGCTGATGCTGGCCGGCATCCTGGTTGGCGAGTACGTC
GCGCCCTGGACCGAGAACATCGCCCAGAGCGGCCGCGCCCTGGCCCAGGGCGGCGGCGATTCGCAAAGCTCC
AAGCGCGGTCTGTGGCATCGCCAGGGGCGCGAGTACATCCACATCAACGCGGTGCAGCCCAATGGCGTGCTG
TACGGCGTGACCCGCTACCGCTTCGACGAGCAGCGTGGCCTGGAATCGGCCAGTTTCGCCAAGCGCGCGCGC
TTCGAGACCGATCACTGGCAACTGGAAGAGGTCACCACCACCTTGCTGCATCCGAGGGAAAAGCGCTCCGAG
GTGGTCAAGCTGCCGACCGAACGCTGGGATGCCCAGCTCAGCCCGCAACTGCTGAACACTGTGGTGATGGAG
CCAGAGGCGCTGTCTATCAGCGGTCTATGGCAGTACATCCACTATCTCGCCGACCAGGGCCTGAACAACAAC
CGCTACTGGCTGGCGTTCTGGACCAAGGTCCTGCAACCGCTGGTGACCGCCGCGCTGGTGCTGATGGCGATT
TCCTTCATCTTCGGTCCGTTGCGCTCGGTGACCCTGGGCCAGCGGATCTTCACCGGCGTGCTGGTGGGCTTC
GTCTTCCGCATCGCCCAGGACCTGCTCGGACCCTCCAGCCTGGTGTTCGACTTCCCGCCGCTGCTGGCGGTG
GTGATCCCCGCCTCGATCTGCGCACTGGCGGGTGTCTGGCTGCTACGCCGGGCGGGCTGA
Translation:
MVKLDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDISASYGIGDALRFIFLTAPRRAYDMLPMAALIGC
LVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEYVAPWTENIAQSGRALAQGGGDSQSS
KRGLWHRQGREYIHINAVQPNGVLYGVTRYRFDEQRGLESASFAKRARFETDHWQLEEVTTTLLHPREKRSE
VVKLPTERWDAQLSPQLLNTVVMEPEALSISGLWQYIHYLADQGLNNNRYWLAFWTKVLQPLVTAALVLMAI
SFIFGPLRSVTLGQRIFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASICALAGVWLLRRAG*
AnnotationID:1912GeneID:1903
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 20:08:06
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:yjgQ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03739,COG0795
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54798.1| (AE016860) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 353

 Score =  537 bits (1383), Expect = e-152
 Identities = 262/355 (73%), Positives = 311/355 (87%), Gaps = 2/355 (0%)

>gb|AAP43525.1| (AY283772) YjgQ [Escherichia coli B]
          Length = 360

 Score =  263 bits (671), Expect = 2e-69
 Identities = 140/356 (39%), Positives = 217/356 (60%), Gaps = 10/356 (2%)









 
Structural Features:
pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family
CD-Length = 350 residues, 100.0% aligned
Score =  216 bits (552), Expect = 6e-57
Identities = 113/353 (32%), Positives = 168/353 (47%), Gaps = 8/353 (2%)

COG0795, Predicted permeases 
CD-Length = 364 residues,  98.9% aligned
Score =  214 bits (545), Expect = 4e-56
Identities = 120/361 (33%), Positives = 179/361 (49%), Gaps = 9/361 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3809




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20956




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31730




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1903_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1903
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3356
                           PA3827_tr
                           translation of PA3827
                           355
                           99.99
                           99.99
                           0
                           1805.0
     

     
     
104076
                           gb|AAG07214.1|AE004800_3
                           (AE004800) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           355
                           99.99
                           99.99
                           0
                           1805.0
     

     
     
104077
                           gb|AAN66608.1|AE016288_7
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           355
                           75.21
                           87.60
                           2
                           1406.0
     

     
     
104078
                           gb|AAO54798.1|
                           (AE016860) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           355
                           73.80
                           87.60
                           2
                           1385.0
     

     
     
104079
                           gb|AAF95641.1|
                           (AE004319) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           359
                           40.11
                           59.05
                           7
                           640.0
     

     






      

          
GC ORFID: 44905How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3827Glimmer Score: 

          
Start: 3713632Stop: 3712565

          
Length: 1068


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3827 translation of PA3827Homolog Bit Score 699.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4404 (ORF: BLASTX 541.0), t_PA3827 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTTAAGCTCGATCGTTACATCGGTGTCACCGTCTTCGTCGCGATCCTCGCGGTGCTCGGGGTGATCCTC 
GGCCTGGCGCTGCTGTTCGCCTTCATCGACGAACTCAACGACATCAGCGCCAGCTACGGCATTGGCGATGCC 
CTGCGCTTCATCTTCCTCACCGCGCCACGGCGCGCCTACGACATGCTGCCGATGGCGGCGCTGATCGGCTGC 
CTGGTCGGCCTCGGCACCCTGGCCAGCAACAGCGAACTGACCATCATGCGCGCGGCCGGGGTATCCCTGTCG 
CGGATCGTCTGGGCGGTGATGAAACCGATGCTGGTGCTGATGCTGGCCGGCATCCTGGTTGGCGAGTACGTC 
GCGCCCTGGACCGAGAACATCGCCCAGAGCGGCCGCGCCCTGGCCCAGGGCGGCGGCGATTCGCAAAGCTCC 
AAGCGCGGTCTGTGGCATCGCCAGGGGCGCGAGTACATCCACATCAACGCGGTGCAGCCCAATGGCGTGCTG 
TACGGCGTGACCCGCTACCGCTTCGACGAGCAGCGTGGCCTGGAATCGGCCAGTTTCGCCAAGCGCGCGCGC 
TTCGAGACCGATCACTGGCAACTGGAAGAGGTCACCACCACCTTGCTGCATCCGAGGGAAAAGCGCTCCGAG 
GTGGTCAAGCTGCCGACCGAACGCTGGGATGCCCAGCTCAGCCCGCAACTGCTGAACACTGTGGTGATGGAG 
CCAGAGGCGCTGTCTATCAGCGGTCTATGGCAGTACATCCACTATCTCGCCGACCAGGGCCTGAACAACAAC 
CGCTACTGGCTGGCGTTCTGGACCAAGGTCCTGCAACCGCTGGTGACCGCCGCGCTGGTGCTGATGGCGATT 
TCCTTCATCTTCGGTCCGTTGCGCTCGGTGACCCTGGGCCAGCGGATCTTCACCGGCGTGCTGGTGGGCTTC 
GTCTTCCGCATCGCCCAGGACCTGCTCGGACCCTCCAGCCTGGTGTTCGACTTCCCGCCGCTGCTGGCGGTG 
GTGATCCCCGCCTCGATCTGCGCACTGGCGGGTGTCTGGCTGCTACGCCGGGCGGGCTGA