ViewGene
Locus Name:
GeneID:
Location:

GeneID:1874
TrivialName: PA14_69480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69480
PAO1 Ortholog Locus:PA5262
Sequence Length:1077
Protein Length:358
Start: 6196585
Stop: 6195509
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08647.1|AE004938_9 (AE004938) alginate biosynthesis protein AlgZ/FimS [Pseudomonas aeruginosa PAO1]
Identities = 358/358 (100%), Positives = 358/358 (100%)
Sequence:
ATGCCTATCCGATTCAAGCCCGGCCGCTCGACCCGGCCGGCCGTCCAAGACGACTTCTTCATTCCCGAGCTC
TGCGAAGCCGAAGCCCTGTTCACCCTGGTGCTGCTGGCGGAGCTGCTGGTGCTGGTGCTGGTGCTGGCGGAG
CCGATGACGCCGAGCTTCAACTGGGTGCGCCTGGCCCTGGCGTCGCTGTTCGTGCAGTGGATCGTACTGCTC
TCGGCGGCGCTGTTCTGCCGCCTGCGGCCATTGCTCGCGCGCCTGCCGGTGGCGCTGGCGGGGAGTGCCTGC
TGCCTGTTGGTGGTGGCCCTCACCCTGGGCTGCACGGCGGTCGCCGAGCACTATCAGCTGGGCGGAGAACTG
ACGCGTGCCGGCGAGGTCAATCTGTATCTGCGGCACGCGCTGATCGCGCTGATCATGTCCGCCCTGGTGCTG
CGCTACTTTTACCTGCAGAGCCAGTGGCGCCGGCAGCAGCAGGCCGAGTTGCAGGCGCGCCTGGAGTCGCTG
CAGGCGCGGATTCGCCCGCACTTCCTGTTCAACAGCCTGAACAGCATCGCCAGCCTGATCGAGCTGGACCCG
CTGAAGGCCGAGCATGCGGTGCTGGACCTGTCCGACCTGTTCCGGGCCAGCCTGGCGAAGCCCGGCACTTTA
GTTTCCTGGGAGGAGGAACTGGCGCTGGCAAGGCGCTATCTTTCCATTGAGCAGTATCGTCTTGGCGATCGC
CTGCAACTGGACTGGCAGGTGCACGGGGTGCCGGCCAACCTGCCGATCCCCCAACTGACCTTGCAGCCGCTG
CTGGAAAATGCGCTTATCTATGGCATCCAGCCGCGGGTCGAAGGTGGCCTGGTGCAGGTCGAGGCGGTTTAT
CGTGAAGGAGTGTTCCAGCTATGTGTGAGCAACCCCTACGACGAGGCGCTCGAGTCGCCCCCGTCGAAAGGC
ACGCGACAGGCGTTACACAATATCGATGCACGACTTGGGGCACTTTTCGGGCCTAAAGCGAGTCTCAGCGTC
GAGCGCCGTGACGGACGGCACTACACCTGTCTACGCTATCCATGTGCGCGACTCATGCAGGAAGCCTGA
Translation:
MPIRFKPGRSTRPAVQDDFFIPELCEAEALFTLVLLAELLVLVLVLAEPMTPSFNWVRLALASLFVQWIVLL
SAALFCRLRPLLARLPVALAGSACCLLVVALTLGCTAVAEHYQLGGELTRAGEVNLYLRHALIALIMSALVL
RYFYLQSQWRRQQQAELQARLESLQARIRPHFLFNSLNSIASLIELDPLKAEHAVLDLSDLFRASLAKPGTL
VSWEEELALARRYLSIEQYRLGDRLQLDWQVHGVPANLPIPQLTLQPLLENALIYGIQPRVEGGLVQVEAVY
REGVFQLCVSNPYDEALESPPSKGTRQALHNIDARLGALFGPKASLSVERRDGRHYTCLRYPCARLMQEA*
AnnotationID:1883GeneID:1874
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 07:07:11
Gene Name:algZ
Confidence Code:1
GeneProduct:alginate biosynthesis protein AlgZ/FimS
Cell Localization:()
Synonyms:fimS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06580
Secondary Functional Category(ies):Two-component regulatory systems
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53680.1| (AE016856) alginate biosynthesis protein AlgZ/FimS [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 360

 Score =  494 bits (1271), Expect = e-139
 Identities = 256/357 (71%), Positives = 292/357 (81%), Gaps = 1/357 (0%)

>gb|AAD31822.1|AF131199_1 (AF131199) cognate sensor kinase [Pseudomonas syringae pv.
           syringae]
          Length = 194

 Score =  295 bits (756), Expect = 2e-79
 Identities = 149/191 (78%), Positives = 164/191 (85%)








 
Structural Features:
pfam06580, His_kinase, Histidine kinase.
CD-Length = 83 residues, 100.0% aligned
Score =  102 bits (257), Expect = 5e-23
Identities = 42/83 (50%), Positives = 54/83 (65%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3751




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20898




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34817




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1874_cdd.html


    		




 
URL:

















    ReferenceID:35732




  
Author/Investigator(s):
        Baynham PJ, Brown AL, Hall LL, Wozniak DJ.





  
Title:
        Pseudomonas aeruginosa AlgZ, a ribbon-helix-helix DNA-binding protein, is essential for alginate synthesis and algD transcriptional activation.




  
PubMed:
        10476040


MedLine:
        




    
Source:
Mol Microbiol. 1999 Sep;33(5):1069-80.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10476040









           
Homologs By Global Alignment 

           

       



     
Gene ID:1874
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3313
                           PA5262_tr
                           translation of PA5262
                           358
                           99.99
                           99.99
                           0
                           1819.0
     

     
     
102792
                           gb|AAG08647.1|AE004938_9
                           (AE004938) alginate biosynthesis protein AlgZ/FimS [Pseudomonas aeruginosa PAO1]
                           358
                           99.99
                           99.99
                           0
                           1819.0
     

     
     
102793
                           gb|AAA88426.2|
                           (L48729) FimS [Pseudomonas aeruginosa]
                           358
                           99.99
                           99.99
                           0
                           1819.0
     

     
     
102794
                           gb|AAC44751.1|
                           (U50713) AlgZ [Pseudomonas aeruginosa]
                           358
                           99.99
                           99.99
                           0
                           1819.0
     

     
     
102795
                           gb|AAB08056.1|
                           (U52431) AlgZ [Pseudomonas aeruginosa]
                           358
                           99.99
                           99.99
                           0
                           1819.0
     

     






      

          
GC ORFID: 44876How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5262Glimmer Score: 

          
Start: 5460272Stop: 5459196

          
Length: 1077


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5262 translation of PA5262Homolog Bit Score 705.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4064 (ORF: BLASTX 494.0), t_PA5262 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTATCCGATTCAAGCCCGGCCGCTCGACCCGGCCGGCCGTCCAAGACGACTTCTTCATTCCCGAGCTC 
TGCGAAGCCGAAGCCCTGTTCACCCTGGTGCTGCTGGCGGAGCTGCTGGTGCTGGTGCTGGTGCTGGCGGAG 
CCGATGACGCCGAGCTTCAACTGGGTGCGCCTGGCCCTGGCGTCGCTGTTCGTGCAGTGGATCGTACTGCTC 
TCGGCGGCGCTGTTCTGCCGCCTGCGGCCATTGCTCGCGCGCCTGCCGGTGGCGCTGGCGGGGAGTGCCTGC 
TGCCTGTTGGTGGTGGCCCTCACCCTGGGCTGCACGGCGGTCGCCGAGCACTATCAGCTGGGCGGAGAACTG 
ACGCGTGCCGGCGAGGTCAATCTGTATCTGCGGCACGCGCTGATCGCGCTGATCATGTCCGCCCTGGTGCTG 
CGCTACTTTTACCTGCAGAGCCAGTGGCGCCGGCAGCAGCAGGCCGAGTTGCAGGCGCGCCTGGAGTCGCTG 
CAGGCGCGGATTCGCCCGCACTTCCTGTTCAACAGCCTGAACAGCATCGCCAGCCTGATCGAGCTGGACCCG 
CTGAAGGCCGAGCATGCGGTGCTGGACCTGTCCGACCTGTTCCGGGCCAGCCTGGCGAAGCCCGGCACTTTA 
GTTTCCTGGGAGGAGGAACTGGCGCTGGCAAGGCGCTATCTTTCCATTGAGCAGTATCGTCTTGGCGATCGC 
CTGCAACTGGACTGGCAGGTGCACGGGGTGCCGGCCAACCTGCCGATCCCCCAACTGACCTTGCAGCCGCTG 
CTGGAAAATGCGCTTATCTATGGCATCCAGCCGCGGGTCGAAGGTGGCCTGGTGCAGGTCGAGGCGGTTTAT 
CGTGAAGGAGTGTTCCAGCTATGTGTGAGCAACCCCTACGACGAGGCGCTCGAGTCGCCCCCGTCGAAAGGC 
ACGCGACAGGCGTTACACAATATCGATGCACGACTTGGGGCACTTTTCGGGCCTAAAGCGAGTCTCAGCGTC 
GAGCGCCGTGACGGACGGCACTACACCTGTCTACGCTATCCATGTGCGCGACTCATGCAGGAAGCCTGA