ViewGene
Locus Name:
GeneID:
Location:

GeneID:1857
TrivialName: PA14_36500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36500
PAO1 Ortholog Locus:PA2172
Sequence Length:1077
Protein Length:358
Start: 3249321
Stop: 3248245
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05560.1|AE004644_7 (AE004644) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 357/358 (99%), Positives = 357/358 (99%)
Sequence:
ATGCGCGAAGAAGACCGCGCCTTGCTCGAGGAACTCCTGCTGGCACGTGGCCCCGGTGGCCAGGAAGACGAG
GTCAGGGCCATCTGCCAGCGGGAACTCGAGGGCTGTTGCGACGAGGTCGGCAGCGATGCCGCCGGCAACCTG
GTCGCGCGCATCAGCCCGCCGCACCTGCCGCGCGAGCAGGCGCGGCGGGCCGCGGTGCGGCTGCTCGCGCAC
CTCGACGAGATCGCCATGATCGTCAAGCGCGTCGAGGCCGACGGTACCCTGCGCGTAGTGGCGCTCGGCGGC
GCCCAGCCGGTGAGCTTCGGCGTCTGTCCGGTACAGATCCTGGCCGGCGAGGCGGTACTCGACGGCGTGCTG
TCCTACGGCAGCATGCATGCTACCGGCGAGTCGCCGCAGGGCTCCGACGTGCTCTCGGGCGCGGTGCACTGG
CGCGACGTACACGTGGTCACCCGGCGCAGCGCCGAGGAACTGGCGAACCTGGACGTGCGACCGGGTACCCGC
GTGGTGCTCAACCGTCTGTGGCGGCGCCCGTTGTACTTCCAGGATTGCGTCGCCGCGCACTTCCTCGACGAC
CGCGCACCGCTGCTCGCCGTGCTCGGCGTGGCTCGCGAGATCGCCCGGCGCCGCGACGAGTTGCACGGCGAC
CTCTACCTGGTGCTCACCACCATGGAGGAGGAGAGTAACGCCGGCGCGCTGTTCGCCGCGCGCCGACTGCCG
GGCGACATCAGCATCGCGGTGGAAGTCGGCCCAACGGTAGCCGAATACGGCACCCGGCTGTGCCGCGACCCG
ATCGTCAACAGCGGCGACTCCAAGGGTTATTACAGCCGCCATGTCACCGACCGCCTGTTGCGGGCCGCCGAA
CGCTGCCAGTACCAGCCGCAGGCGGCGCTGCTGGTGGACTTCGCCTCGGACGCCAGCGCCCTGCTGAGCCAC
GGCGAGGCCGCGCAGGTCGGCTGCATCGGCATTCCGACCGAGAACACCCACGGTTTCGAGATCGTCCTGGAA
GAGGGCATCGAGGCTTGCCGGCGGACGCTGGTCGAGTTCCTCGTGCAACCGCCGGACGACGAAGCCTGA
Translation:
MREEDRALLEELLLARGPGGQEDEVRAICQRELEGCCDEVGSDAAGNLVARISPPHLPREQARRAAVRLLAH
LDEIAMIVKRVEADGTLRVVALGGAQPVSFGVCPVQILAGEAVLDGVLSYGSMHATGESPQGSDVLSGAVHW
RDVHVVTRRSAEELANLDVRPGTRVVLNRLWRRPLYFQDCVAAHFLDDRAPLLAVLGVAREIARRRDELHGD
LYLVLTTMEEESNAGALFAARRLPGDISIAVEVGPTVAEYGTRLCRDPIVNSGDSKGYYSRHVTDRLLRAAE
RCQYQPQAALLVDFASDASALLSHGEAAQVGCIGIPTENTHGFEIVLEEGIEACRRTLVEFLVQPPDDEA*
AnnotationID:1866GeneID:1857
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 12:12:33
Gene Name:
Confidence Code:3
GeneProduct:putative cellulase
Cell Localization:()
Synonyms:PA2172
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1363,pfam05343
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1363, FrvX, Cellulase M and related proteins 
[Carbohydrate transport and metabolism]
CD-Length = 355 residues,  98.9% aligned
Score =  270 bits (691), Expect = 2e-73
Identities = 115/364 (31%), Positives = 165/364 (45%), Gaps = 20/364 (5%)

pfam05343, Peptidase_M42, M42 glutamyl aminopeptidase
CD-Length = 295 residues,  99.3% aligned
Score =  127 bits (322), Expect = 2e-30
Identities = 78/308 (25%), Positives = 124/308 (40%), Gaps = 24/308 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3717




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20864




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32559




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1857_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1857
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3260
                           PA2172_tr
                           translation of PA2172
                           358
                           99.72
                           99.72
                           0
                           1825.0
     

     
     
101054
                           gb|AAG05560.1|AE004644_7
                           (AE004644) hypothetical protein PA2172 [Pseudomonas aeruginosa PAO1]
                           358
                           99.72
                           99.72
                           0
                           1825.0
     

     






      

          
GC ORFID: 44859How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2172Glimmer Score: 

          
Start: 1704594Stop: 1705670

          
Length: 1077


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2172 translation of PA2172Homolog Bit Score 707.0

          
Other Homologs:  t_PA2172 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGAAGAAGACCGCGCCTTGCTCGAGGAACTCCTGCTGGCACGTGGCCCCGGTGGCCAGGAAGACGAG 
GTCAGGGCCATCTGCCAGCGGGAACTCGAGGGCTGTTGCGACGAGGTCGGCAGCGATGCCGCCGGCAACCTG 
GTCGCGCGCATCAGCCCGCCGCACCTGCCGCGCGAGCAGGCGCGGCGGGCCGCGGTGCGGCTGCTCGCGCAC 
CTCGACGAGATCGCCATGATCGTCAAGCGCGTCGAGGCCGACGGTACCCTGCGCGTAGTGGCGCTCGGCGGC 
GCCCAGCCGGTGAGCTTCGGCGTCTGTCCGGTACAGATCCTGGCCGGCGAGGCGGTACTCGACGGCGTGCTG 
TCCTACGGCAGCATGCATGCTACCGGCGAGTCGCCGCAGGGCTCCGACGTGCTCTCGGGCGCGGTGCACTGG 
CGCGACGTACACGTGGTCACCCGGCGCAGCGCCGAGGAACTGGCGAACCTGGACGTGCGACCGGGTACCCGC 
GTGGTGCTCAACCGTCTGTGGCGGCGCCCGTTGTACTTCCAGGATTGCGTCGCCGCGCACTTCCTCGACGAC 
CGCGCACCGCTGCTCGCCGTGCTCGGCGTGGCTCGCGAGATCGCCCGGCGCCGCGACGAGTTGCACGGCGAC 
CTCTACCTGGTGCTCACCACCATGGAGGAGGAGAGTAACGCCGGCGCGCTGTTCGCCGCGCGCCGACTGCCG 
GGCGACATCAGCATCGCGGTGGAAGTCGGCCCAACGGTAGCCGAATACGGCACCCGGCTGTGCCGCGACCCG 
ATCGTCAACAGCGGCGACTCCAAGGGTTATTACAGCCGCCATGTCACCGACCGCCTGTTGCGGGCCGCCGAA 
CGCTGCCAGTACCAGCCGCAGGCGGCGCTGCTGGTGGACTTCGCCTCGGACGCCAGCGCCCTGCTGAGCCAC 
GGCGAGGCCGCGCAGGTCGGCTGCATCGGCATTCCGACCGAGAACACCCACGGTTTCGAGATCGTCCTGGAA 
GAGGGCATCGAGGCTTGCCGGCGGACGCTGGTCGAGTTCCTCGTGCAACCGCCGGACGACGAAGCCTGA