ViewGene
Locus Name:
GeneID:
Location:

GeneID:1838
TrivialName: PA14_31480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31480
PAO1 Ortholog Locus:PA2556
Sequence Length:1086
Protein Length:361
Start: 2737104
Stop: 2738189
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05944.1|AE004683_8 (AE004683) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 356/361 (98%), Positives = 358/361 (99%)
Sequence:
GTGAAGAACGACGGCGAGACTCAGGCGAGCACCAAGGGCACCATCTCGGTGCGCCTGGTCGGCGAGGCGCTG
GTGGAGTGGCGCCGGCAGGGCGGCGAGGAGGGGGAGGTCCTCCAGGCCGCCGGTATCGATCCGCAGTTGCTC
GGCAAACCCTACGCGCGGGTCACCTCGCACGCCTATTCGCGGCTCTGGCTGGATCTGGCTCGGCGCATGGAC
GACGAGTTCTTCGGCATGGACGCGCGGCGCCTGAAGAGTGGCAGCTTCGCTTTCATGAGCCGCTGCGCGATC
CACGAGCAGACCCTGGAACCGGCGCTGACCGGCATCCTGCGATTCCTCTGCCTGCAGTTCGACGACTTCCAG
CCGCGCCTGCAGCGCCGCGGCGGCCTGGCGGAAATCGTCCTCGACGAGGCGCCGGGCCGGTACGGGCGAGCG
CTGTCCTACTTCACCCTGTGGATGATCACCCATGGCCTGGCCTGCTGGCTGGTCGGCCGGCGCATCCCGATC
CTGGCCATCGACCTGCGCTGTCCGCAGCCGGACTACATCGAGGACTACCGGGTGATGTTCAGCGACAACCTG
CGTTTCTCCCGTCCCCTCAGCCGCCTGCTGTTCAATGCCGACTGCCTGGCTCTGCCGGTCCGCCGCGACAAG
CGGGAGCTGCGGCGCTTCCTGCTCGGCGCGCCGGCCAACATCCTGGTCCGCTATCGCGATCCGCAGAGCCTG
GCGGCGCGGATCAAGGCCTACCTGCGCAGCCTGCGGCCGGGACGCTGGCCGGACGCGGACGCGCTCGCCGGG
CATTTCTTCATGGCGCCCTCGACCCTGCGCCGCAAGCTGTCCCTGGAAGGGCAGAGCTACCAGGCGCTGAAG
GACCAGGTCCGCCGCGACCTGGCCATCGCGCGGCTGGACGCCGGCGCGGCGAATTTCGCCGAACTGGCGCTG
GAGCTGGGCTTCGCCGATGGCAGCGCGTTCCACAAGGCGTTCAAGAAGTGGACCGGCTTGACCCCCGGGCAG
TACCGGGCGCAGGTCGCGGCGGAAACCGCGTCGGCCGAGTCGTCAGGCGTCTTGTCCGAAACGCTCGGCCGT
CGATAG
Translation:
MKNDGETQASTKGTISVRLVGEALVEWRRQGGEEGEVLQAAGIDPQLLGKPYARVTSHAYSRLWLDLARRMD
DEFFGMDARRLKSGSFAFMSRCAIHEQTLEPALTGILRFLCLQFDDFQPRLQRRGGLAEIVLDEAPGRYGRA
LSYFTLWMITHGLACWLVGRRIPILAIDLRCPQPDYIEDYRVMFSDNLRFSRPLSRLLFNADCLALPVRRDK
RELRRFLLGAPANILVRYRDPQSLAARIKAYLRSLRPGRWPDADALAGHFFMAPSTLRRKLSLEGQSYQALK
DQVRRDLAIARLDAGAANFAELALELGFADGSAFHKAFKKWTGLTPGQYRAQVAAETASAESSGVLSETLGR
R*
AnnotationID:1847GeneID:1838
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 06:06:47
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA2556
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342,COG2207
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67824.1|AE016413_6 (AE016782) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 340

 Score =  343 bits (880), Expect = 9e-94
 Identities = 181/337 (53%), Positives = 226/337 (67%)








 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  95.2% aligned
Score = 67.9 bits (166), Expect = 2e-12
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
CD-Length = 127 residues,  95.3% aligned
Score = 66.4 bits (161), Expect = 4e-12
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 3/123 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14443




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20826




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33133




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1838_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1838
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3223
                           PA2556_tr
                           translation of PA2556
                           361
                           98.61
                           99.16
                           0
                           1840.0
     

     
     
99864
                           gb|AAG05944.1|AE004683_8
                           (AE004683) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           361
                           98.33
                           99.16
                           0
                           1837.0
     

     
     
99865
                           gb|AAN67824.1|AE016413_6
                           (AE016782) transcriptional regulator, AraC family [Pseudomonas putida KT2440]
                           361
                           50.13
                           62.60
                           21
                           877.0
     

     
     
99866
                           gb|AAK65451.1|
                           (AE007266) Putative transcription factor [Sinorhizobium meliloti]
                           362
                           40.88
                           58.83
                           7
                           665.0
     

     
     
99869
                           emb|CAE27742.1|
                           (BX572600) probable transcriptional regulator, AraC family [Rhodopseudomonas palustris CGA009]
                           363
                           38.84
                           53.16
                           35
                           638.0
     

     






      

          
GC ORFID: 44840How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2556Glimmer Score: 

          
Start: 2216822Stop: 2215737

          
Length: 1086


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2556 translation of PA2556Homolog Bit Score 713.0

          
Other Homologs:  t_PA1182 (ORF: BLASTX 206.0), t_PA2556 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAGAACGACGGCGAGACTCAGGCGAGCACCAAGGGCACCATCTCGGTGCGCCTGGTCGGCGAGGCGCTG 
GTGGAGTGGCGCCGGCAGGGCGGCGAGGAGGGGGAGGTCCTCCAGGCCGCCGGTATCGATCCGCAGTTGCTC 
GGCAAACCCTACGCGCGGGTCACCTCGCACGCCTATTCGCGGCTCTGGCTGGATCTGGCTCGGCGCATGGAC 
GACGAGTTCTTCGGCATGGACGCGCGGCGCCTGAAGAGTGGCAGCTTCGCTTTCATGAGCCGCTGCGCGATC 
CACGAGCAGACCCTGGAACCGGCGCTGACCGGCATCCTGCGATTCCTCTGCCTGCAGTTCGACGACTTCCAG 
CCGCGCCTGCAGCGCCGCGGCGGCCTGGCGGAAATCGTCCTCGACGAGGCGCCGGGCCGGTACGGGCGAGCG 
CTGTCCTACTTCACCCTGTGGATGATCACCCATGGCCTGGCCTGCTGGCTGGTCGGCCGGCGCATCCCGATC 
CTGGCCATCGACCTGCGCTGTCCGCAGCCGGACTACATCGAGGACTACCGGGTGATGTTCAGCGACAACCTG 
CGTTTCTCCCGTCCCCTCAGCCGCCTGCTGTTCAATGCCGACTGCCTGGCTCTGCCGGTCCGCCGCGACAAG 
CGGGAGCTGCGGCGCTTCCTGCTCGGCGCGCCGGCCAACATCCTGGTCCGCTATCGCGATCCGCAGAGCCTG 
GCGGCGCGGATCAAGGCCTACCTGCGCAGCCTGCGGCCGGGACGCTGGCCGGACGCGGACGCGCTCGCCGGG 
CATTTCTTCATGGCGCCCTCGACCCTGCGCCGCAAGCTGTCCCTGGAAGGGCAGAGCTACCAGGCGCTGAAG 
GACCAGGTCCGCCGCGACCTGGCCATCGCGCGGCTGGACGCCGGCGCGGCGAATTTCGCCGAACTGGCGCTG 
GAGCTGGGCTTCGCCGATGGCAGCGCGTTCCACAAGGCGTTCAAGAAGTGGACCGGCTTGACCCCCGGGCAG 
TACCGGGCGCAGGTCGCGGCGGAAACCGCGTCGGCCGAGTCGTCAGGCGTCTTGTCCGAAACGCTCGGCCGT 
CGATAG