ViewGene
Locus Name:
GeneID:
Location:

GeneID:1825
TrivialName: PA14_42600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42600
PAO1 Ortholog Locus:PA1695
Sequence Length:1119
Protein Length:372
Start: 3789550
Stop: 3790668
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05084.1|AE004596_10 (AE004596) translocation protein in type III secretion [Pseudomonas aeruginosa PAO1]
Identities = 362/372 (97%), Positives = 364/372 (97%), Gaps = 3/372 (0%)
Sequence:
ATGCTCAAGCTGAACGCCGTGGATACGGCTCCGCTCGTGTCGTCCGACACCCCTGCCCCCCTTCCACCGCTG
CGCGCGCAGCAGATCGCCTTCGAACAGGCCCTGCCCGCGCACCGACCGCCGGCGCCCAGGCCACCGTTCGAC
AAGGGCGACGAAACGACAGAGGCCGAAGAGCCCGCCGCGACAGCCGACGCGCCGACCTCGACGCCTCTCGCC
GACCAGCCCGCGGCGCCTGCCGCCGACCGGCCGCCGACCACTCGGCAAGCCCCCGTGCCAGTTGCCGCGGAC
GCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACA
GTGTCGCCGTCCGGATCGGTAGCACGGCAAGCGCCGGCGGTCTCCGCGCGCGTCGCGGCGTCCACGCAAGCC
CGGGAGCCGGCCAGCGTTTCGGCGCCTCCGGTCGACGAACCGCCGCTGGTGCCGGTGTCCTCCCACCCGCAA
ATCGCAGGTCGGACGCATGAGCGGCCGCAGCCCGGCCCCGGCTTCCCGGCGAAAGCCGCAGCCGAGGTCGCG
CCCACGGCGCAGGCCAGTGCCCAGGCTTCGCCGCCCGCGCCGACAGCGGGCGGCGAAGGCCGCGGAGAGGAG
CGTCGGCAACCCGGAGAAACCGATCCATCCGCACTGCCCCCCGACGACCAAGCGCCTGTGCCACTGCCTGCC
ATGCAAACCCCCGGCGACCGCCTGCTGGCACGCCTGCTGGCATCGAGCGGGAGCCGGCCACTGCCGCTGGCC
GATCTCGCGCGCCTGCTCGATGCCGTGCAGGGGCGCATCCAGGTCGCCAGCGCAGCCGAAAGCCATGCGGCG
CGCCTGCAGGTGCAACTGCCCCAGCTCGGCGCCGTGGAGGTGCAGGTCCTGCATGGCCATGGCCAGTTGCAG
ATCGAGATCAGTGCCAGCCCCGGCAGCCTGGCGTTGCTCCAGCAAGCCCGTGGCGAGTTGCTCGAACGCCTG
CAACGGCTGCATCCGGAACAACCGGTGCAACTCACCTTCAATCAGCAGCAGGACAGCGGTCAGCGCTCGCGG
CAACGTCGCTACCTGCATGAAGAGTGGCAAGCCGAATGA
Translation:
MLKLNAVDTAPLVSSDTPAPLPPLRAQQIAFEQALPAHRPPAPRPPFDKGDETTEAEEPAATADAPTSTPLA
DQPAAPAADRPPTTRQAPVPVAADATPTPTPTPTPTPTPTPTPTPTPTVSPSGSVARQAPAVSARVAASTQA
REPASVSAPPVDEPPLVPVSSHPQIAGRTHERPQPGPGFPAKAAAEVAPTAQASAQASPPAPTAGGEGRGEE
RRQPGETDPSALPPDDQAPVPLPAMQTPGDRLLARLLASSGSRPLPLADLARLLDAVQGRIQVASAAESHAA
RLQVQLPQLGAVEVQVLHGHGQLQIEISASPGSLALLQQARGELLERLQRLHPEQPVQLTFNQQQDSGQRSR
QRRYLHEEWQAE*
AnnotationID:1834GeneID:1825
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 13:01:06
Gene Name:pscP
Confidence Code:2
GeneProduct:translocation protein in type III secretion
Cell Localization:()
Synonyms:PA1695
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3653




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20800




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37211




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1825_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1825
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3206
                           PA1695_tr
                           translation of PA1695
                           372
                           97.31
                           97.84
                           3
                           1848.0
     

     
     
99549
                           gb|AAG05084.1|AE004596_10
                           (AE004596) translocation protein in type III secretion [Pseudomonas aeruginosa PAO1]
                           372
                           97.31
                           97.84
                           3
                           1848.0
     

     






      

          
GC ORFID: 44827How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1695Glimmer Score: 

          
Start: 1164359Stop: 1163241

          
Length: 1119


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1695 translation of PA1695Homolog Bit Score 715.0

          
Other Homologs:  t_PA1695 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCAAGCTGAACGCCGTGGATACGGCTCCGCTCGTGTCGTCCGACACCCCTGCCCCCCTTCCACCGCTG 
CGCGCGCAGCAGATCGCCTTCGAACAGGCCCTGCCCGCGCACCGACCGCCGGCGCCCAGGCCACCGTTCGAC 
AAGGGCGACGAAACGACAGAGGCCGAAGAGCCCGCCGCGACAGCCGACGCGCCGACCTCGACGCCTCTCGCC 
GACCAGCCCGCGGCGCCTGCCGCCGACCGGCCGCCGACCACTCGGCAAGCCCCCGTGCCAGTTGCCGCGGAC 
GCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACA 
GTGTCGCCGTCCGGATCGGTAGCACGGCAAGCGCCGGCGGTCTCCGCGCGCGTCGCGGCGTCCACGCAAGCC 
CGGGAGCCGGCCAGCGTTTCGGCGCCTCCGGTCGACGAACCGCCGCTGGTGCCGGTGTCCTCCCACCCGCAA 
ATCGCAGGTCGGACGCATGAGCGGCCGCAGCCCGGCCCCGGCTTCCCGGCGAAAGCCGCAGCCGAGGTCGCG 
CCCACGGCGCAGGCCAGTGCCCAGGCTTCGCCGCCCGCGCCGACAGCGGGCGGCGAAGGCCGCGGAGAGGAG 
CGTCGGCAACCCGGAGAAACCGATCCATCCGCACTGCCCCCCGACGACCAAGCGCCTGTGCCACTGCCTGCC 
ATGCAAACCCCCGGCGACCGCCTGCTGGCACGCCTGCTGGCATCGAGCGGGAGCCGGCCACTGCCGCTGGCC 
GATCTCGCGCGCCTGCTCGATGCCGTGCAGGGGCGCATCCAGGTCGCCAGCGCAGCCGAAAGCCATGCGGCG 
CGCCTGCAGGTGCAACTGCCCCAGCTCGGCGCCGTGGAGGTGCAGGTCCTGCATGGCCATGGCCAGTTGCAG 
ATCGAGATCAGTGCCAGCCCCGGCAGCCTGGCGTTGCTCCAGCAAGCCCGTGGCGAGTTGCTCGAACGCCTG 
CAACGGCTGCATCCGGAACAACCGGTGCAACTCACCTTCAATCAGCAGCAGGACAGCGGTCAGCGCTCGCGG 
CAACGTCGCTACCTGCATGAAGAGTGGCAAGCCGAATGA