ViewGene
Locus Name:
GeneID:
Location:

GeneID:1808
TrivialName: PA14_44280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44280
PAO1 Ortholog Locus:PA1563
Sequence Length:1059
Protein Length:352
Start: 3940144
Stop: 3939086
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04952.1|AE004584_8 (AE004584) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 351/352 (99%), Positives = 351/352 (99%)
Sequence:
ATGAATACCCTGTTGATGCACTGCCGGCCAGGCTTCGAAGGTGAAGTCTGCGCCGAAATCGCCGAGCATGCA
GCCACTCTCGAGATTCCCGGCTACGCCAAGAGCAAGCCGGCCAGCGCCCACGTCGAGTTCGTCTGCCAGGAC
GCCGACGGCGCCGAGCGCCTGATGCGCCGCCTGCGTTTCGCCGACTTGATCTTCCCGCGCCAGTGGGCGCGC
GGACCCGGCTTCATCGAATTGCCGGAAAGCCAGCGCATCGAGGTGCTGCTGGCGGAACTGGCGAGTTATCCG
GTCTGCGGCAGCCTCTGGCTGGAGGTGCTGGACACCAATGCCGGCAAGGAGGTCTCGACCTTCTGCCGCAAG
TTCGAGAAACCGCTGCGCGCCGCGCTGGTGAAGGCCGGGCGGTTGCAGGAGGACCCGGCGCTGCCGCGCCTG
CTGCTGACCTTCCGCTCCGGCCGGGAGGTCTTCGTCGGCCTCGCCGAGCCGCGCAACAGCGCGCTCTGGCCG
ATGGGCATCCCGCGCCTGAAGTTTCCCCGCGAGGCGCCGAGCCGTTCGACGCTGAAGCTGGAGGAAGCCTGG
CACCAGTTCATCCCGCGCAGCGAATGGGACAAGCGCCTGGCGCCGGATATGCTCGCCGTGGACCTCGGTGCG
GCGCCGGGCGGCTGGACCTGGCAACTGGTTAACCGGGAGATGCGGGTGACCGCCGTGGACAACGGGCCGATG
GCGGAGAACCTGATGTATTCCGGGCTGGTCGACCACCAGAAGGTCGACGGCTACCAGTACCGCCCGCGCCAA
CGGGTCGACTGGATGGTCTGCGACATCGTCGAGAAGCCGGCACGCACCGGTGCGTTGATCGAGACCTGGATC
GGCGAAGGGCTTTGCCGCGAGGCGGTGGTCAACCTCAAGCTGCCGATGAAGCAGCGCTACGCCGAGGTGCGC
AAGATCCTCCAGCGCCTGCGCGAGAGCTTCGACGCGCGCGGCCTGAAGGTAGTGATCGGCTGCAAGCAGCTG
TATCACGACCGCGAGGAAGTGACCTGCCATCTACGCCGCCTTGAACGCTGA
Translation:
MNTLLMHCRPGFEGEVCAEIAEHAATLEIPGYAKSKPASAHVEFVCQDADGAERLMRRLRFADLIFPRQWAR
GPGFIELPESQRIEVLLAELASYPVCGSLWLEVLDTNAGKEVSTFCRKFEKPLRAALVKAGRLQEDPALPRL
LLTFRSGREVFVGLAEPRNSALWPMGIPRLKFPREAPSRSTLKLEEAWHQFIPRSEWDKRLAPDMLAVDLGA
APGGWTWQLVNREMRVTAVDNGPMAENLMYSGLVDHQKVDGYQYRPRQRVDWMVCDIVEKPARTGALIETWI
GEGLCREAVVNLKLPMKQRYAEVRKILQRLRESFDARGLKVVIGCKQLYHDREEVTCHLRRLER*
AnnotationID:1817GeneID:1808
AnnotatorUID: diggins
Modification Date/Time: 2005-05-30 14:02:54
Gene Name:
Confidence Code:3
GeneProduct:putative SAM-dependent methyltransferase
Cell Localization:()
Synonyms:ygdE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2933
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN81821.1|AE016765_223 (AE016765) Hypothetical protein ygdE [Escherichia coli CFT073]
          Length = 366

 Score =  322 bits (825), Expect = 2e-87
 Identities = 176/355 (49%), Positives = 226/355 (63%), Gaps = 5/355 (1%)

>gb|AAL21858.1| (AE008836) putative SAM-dependent methyltransferase [Salmonella
           typhimurium LT2]
          Length = 366

 Score =  321 bits (823), Expect = 4e-87
 Identities = 178/355 (50%), Positives = 224/355 (63%), Gaps = 5/355 (1%)








 
Structural Features:
COG2933, COG2933, Predicted SAM-dependent methyltransferase 
CD-Length = 358 residues,  99.7% aligned
Score =  549 bits (1417), Expect = 1e-157
Identities = 202/357 (56%), Positives = 240/357 (67%), Gaps = 5/357 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3619




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20766




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37283




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1808_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1808
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3178
                           PA1563_tr
                           translation of PA1563
                           352
                           99.71
                           99.71
                           0
                           1858.0
     

     
     
98686
                           gb|AAG04952.1|AE004584_8
                           (AE004584) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           352
                           99.71
                           99.71
                           0
                           1858.0
     

     
     
98688
                           gb|AAN67726.1|AE016404_1
                           (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440]
                           355
                           74.08
                           83.09
                           4
                           1403.0
     

     
     
98687
                           gb|AAO55535.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           358
                           71.78
                           83.79
                           7
                           1404.0
     

     
     
98696
                           gb|AAL21858.1|
                           (AE008836) putative SAM-dependent methyltransferase [Salmonella typhimurium LT2]
                           366
                           49.18
                           61.74
                           14
                           827.0
     

     






      

          
GC ORFID: 44810How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1563Glimmer Score: 

          
Start: 1013765Stop: 1014823

          
Length: 1059


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1563 translation of PA1563Homolog Bit Score 720.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7967 (ORF: BLASTX 554.0), t_PA1563 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATACCCTGTTGATGCACTGCCGGCCAGGCTTCGAAGGTGAAGTCTGCGCCGAAATCGCCGAGCATGCA 
GCCACTCTCGAGATTCCCGGCTACGCCAAGAGCAAGCCGGCCAGCGCCCACGTCGAGTTCGTCTGCCAGGAC 
GCCGACGGCGCCGAGCGCCTGATGCGCCGCCTGCGTTTCGCCGACTTGATCTTCCCGCGCCAGTGGGCGCGC 
GGACCCGGCTTCATCGAATTGCCGGAAAGCCAGCGCATCGAGGTGCTGCTGGCGGAACTGGCGAGTTATCCG 
GTCTGCGGCAGCCTCTGGCTGGAGGTGCTGGACACCAATGCCGGCAAGGAGGTCTCGACCTTCTGCCGCAAG 
TTCGAGAAACCGCTGCGCGCCGCGCTGGTGAAGGCCGGGCGGTTGCAGGAGGACCCGGCGCTGCCGCGCCTG 
CTGCTGACCTTCCGCTCCGGCCGGGAGGTCTTCGTCGGCCTCGCCGAGCCGCGCAACAGCGCGCTCTGGCCG 
ATGGGCATCCCGCGCCTGAAGTTTCCCCGCGAGGCGCCGAGCCGTTCGACGCTGAAGCTGGAGGAAGCCTGG 
CACCAGTTCATCCCGCGCAGCGAATGGGACAAGCGCCTGGCGCCGGATATGCTCGCCGTGGACCTCGGTGCG 
GCGCCGGGCGGCTGGACCTGGCAACTGGTTAACCGGGAGATGCGGGTGACCGCCGTGGACAACGGGCCGATG 
GCGGAGAACCTGATGTATTCCGGGCTGGTCGACCACCAGAAGGTCGACGGCTACCAGTACCGCCCGCGCCAA 
CGGGTCGACTGGATGGTCTGCGACATCGTCGAGAAGCCGGCACGCACCGGTGCGTTGATCGAGACCTGGATC 
GGCGAAGGGCTTTGCCGCGAGGCGGTGGTCAACCTCAAGCTGCCGATGAAGCAGCGCTACGCCGAGGTGCGC 
AAGATCCTCCAGCGCCTGCGCGAGAGCTTCGACGCGCGCGGCCTGAAGGTAGTGATCGGCTGCAAGCAGCTG 
TATCACGACCGCGAGGAAGTGACCTGCCATCTACGCCGCCTTGAACGCTGA