ViewGene
Locus Name:
GeneID:
Location:

GeneID:1780
TrivialName: PA14_58880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58880
PAO1 Ortholog Locus:PA4539
Sequence Length:1092
Protein Length:363
Start: 5244719
Stop: 5243628
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07927.1|AE004867_13 (AE004867) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 357/363 (98%), Positives = 359/363 (98%)
Sequence:
GTGTCTTTCGGTTCTTTTTCGCGGCGTTCACCCATGACCGGCACCAAGCCCACAACGCCCGTAGCCCGCTAT
TTCCACCAAGAGGCGCAACGGCGCGGCTATGTGCTGGACGCAGCTCAGGGCAATGCCATTCTTCATCTCGAT
CGATTGGCGGAGCGCTTGCGTCGAGGCCCGTCGCTATTCCGGCAAGCGCCGCGCAGCCTCTACCTGTGGGGT
CCGGTCGGGCGCGGCAAGAGCTGGCTGATGGATGGCTTCTTTCGCAGCGCTGATTTGCAGGGCCTGCGCCGG
ACGCATTTCCATGCGTTCTTTCGCCAGCTTCATGACGGCATGTTCCGCCGCCAGGGGCGGCCCGATGCCCTG
GGCGGTGCGCTCGACGAACTGCTAGGAGATTGCCGGCTGCTTTGCTTCGACGAATTCCATGTCCACGACATC
GGCGACGCGATGCTGATAACACGCCTGTTCAGGGAGCTGTTCCGCAGGAAGATCACCCTGGTCTGCACCTCC
AACTACGCGCCGCGGCAACTGCTGCCCAATCCGCTCTACCACGAACGCTTCCTGCCGGCGATCCGGTTGATC
GAGACGCGCATGGAAGTGCTGGAAGTAGCCGGCGCCCGGGACTACCGGACGATTTCGCCGCGGCAGGAGATC
GCTTCCGGTTATGCCAGCGGCGGGTATTGCTGGCCAGCCTCATGCGCTTGCCTGGACGAGCTGGGCTTGTCC
GCGCCCGAGCGCTCGCAACGCGTGATCCTGCAAAGCGGCGCGAGGACGTTGCAGGCGCGCGCGGTGTGCGGC
GACCTGGTGTGGTTCGCCTTCGCCGACCTTTGCGAGGCGCCAACCGCGGTGATGGACTACCTTGCCCTCGGC
GAACGCTTCTCTACCTGGGTGCTGGACGGCGTACCGCCGATGGCGCGCTGTTCGGTCGCCGCCCAGCAGCGC
TTCATCAATCTCGTCGACGTCCTTTACGACAATGACCGGCGTTTTTTCCTGAGTGCCGAAAAGGCGCTGCCG
GACCTGGTCGAGGGCAGCGACCTGCCTGCGGACATGCAGCGTACCGCCAGTCGGCTGGCGCAGTTGCGCCAG
CTTCGCTGTTGA
Translation:
MSFGSFSRRSPMTGTKPTTPVARYFHQEAQRRGYVLDAAQGNAILHLDRLAERLRRGPSLFRQAPRSLYLWG
PVGRGKSWLMDGFFRSADLQGLRRTHFHAFFRQLHDGMFRRQGRPDALGGALDELLGDCRLLCFDEFHVHDI
GDAMLITRLFRELFRRKITLVCTSNYAPRQLLPNPLYHERFLPAIRLIETRMEVLEVAGARDYRTISPRQEI
ASGYASGGYCWPASCACLDELGLSAPERSQRVILQSGARTLQARAVCGDLVWFAFADLCEAPTAVMDYLALG
ERFSTWVLDGVPPMARCSVAAQQRFINLVDVLYDNDRRFFLSAEKALPDLVEGSDLPADMQRTASRLAQLRQ
LRC*
AnnotationID:1789GeneID:1780
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 18:06:28
Gene Name:
Confidence Code:3
GeneProduct:putative ATPase
Cell Localization:()
Synonyms:PA4539
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03969,COG1485
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam03969, AFG1_ATPase, AFG1-like ATPase. 
CD-Length = 360 residues,  98.1% aligned
Score =  414 bits (1065), Expect = 2e-116
Identities = 167/356 (46%), Positives = 197/356 (55%), Gaps = 16/356 (4%)

COG1485, Predicted ATPase 
CD-Length = 367 residues,  98.4% aligned
Score =  373 bits (958), Expect = 5e-104
Identities = 147/366 (40%), Positives = 186/366 (50%), Gaps = 17/366 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14425




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20710




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31580




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1780_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1780
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3144
                           PA4539_tr
                           translation of PA4539
                           363
                           98.34
                           98.89
                           0
                           1874.0
     

     
     
97770
                           gb|AAG07927.1|AE004867_13
                           (AE004867) hypothetical protein PA4539 [Pseudomonas aeruginosa PAO1]
                           363
                           98.07
                           98.89
                           0
                           1871.0
     

     
     
97771
                           gb|AAN67965.1|AE016429_1
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           397
                           44.58
                           56.92
                           56
                           827.0
     

     






      

          
GC ORFID: 44782How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4539Glimmer Score: 

          
Start: 4508398Stop: 4507307

          
Length: 1092


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4539 translation of PA4539Homolog Bit Score 726.0

          
Other Homologs:  t_PA4539 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCTTTCGGTTCTTTTTCGCGGCGTTCACCCATGACCGGCACCAAGCCCACAACGCCCGTAGCCCGCTAT 
TTCCACCAAGAGGCGCAACGGCGCGGCTATGTGCTGGACGCAGCTCAGGGCAATGCCATTCTTCATCTCGAT 
CGATTGGCGGAGCGCTTGCGTCGAGGCCCGTCGCTATTCCGGCAAGCGCCGCGCAGCCTCTACCTGTGGGGT 
CCGGTCGGGCGCGGCAAGAGCTGGCTGATGGATGGCTTCTTTCGCAGCGCTGATTTGCAGGGCCTGCGCCGG 
ACGCATTTCCATGCGTTCTTTCGCCAGCTTCATGACGGCATGTTCCGCCGCCAGGGGCGGCCCGATGCCCTG 
GGCGGTGCGCTCGACGAACTGCTAGGAGATTGCCGGCTGCTTTGCTTCGACGAATTCCATGTCCACGACATC 
GGCGACGCGATGCTGATAACACGCCTGTTCAGGGAGCTGTTCCGCAGGAAGATCACCCTGGTCTGCACCTCC 
AACTACGCGCCGCGGCAACTGCTGCCCAATCCGCTCTACCACGAACGCTTCCTGCCGGCGATCCGGTTGATC 
GAGACGCGCATGGAAGTGCTGGAAGTAGCCGGCGCCCGGGACTACCGGACGATTTCGCCGCGGCAGGAGATC 
GCTTCCGGTTATGCCAGCGGCGGGTATTGCTGGCCAGCCTCATGCGCTTGCCTGGACGAGCTGGGCTTGTCC 
GCGCCCGAGCGCTCGCAACGCGTGATCCTGCAAAGCGGCGCGAGGACGTTGCAGGCGCGCGCGGTGTGCGGC 
GACCTGGTGTGGTTCGCCTTCGCCGACCTTTGCGAGGCGCCAACCGCGGTGATGGACTACCTTGCCCTCGGC 
GAACGCTTCTCTACCTGGGTGCTGGACGGCGTACCGCCGATGGCGCGCTGTTCGGTCGCCGCCCAGCAGCGC 
TTCATCAATCTCGTCGACGTCCTTTACGACAATGACCGGCGTTTTTTCCTGAGTGCCGAAAAGGCGCTGCCG 
GACCTGGTCGAGGGCAGCGACCTGCCTGCGGACATGCAGCGTACCGCCAGTCGGCTGGCGCAGTTGCGCCAG 
CTTCGCTGTTGA