ViewGene
Locus Name:
GeneID:
Location:

GeneID:178
TrivialName: PA14_44740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44740
PAO1 Ortholog Locus:PA1523
Sequence Length:2400
Protein Length:799
Start: 3986936
Stop: 3989335
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04912.1|AE004580_12 (AE004580) xanthine dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 797/799 (99%), Positives = 799/799 (100%)
Sequence:
ATGTCTAACCATCGCAAGCCGCACAAGAGCCAGGAAGAGCTGGCCGACCTGTTCCGCGCCGAGCTGACCACC
GGAGTCGGCCGCAGCGTCAAGCACGAAAGCGCCCCCAAGCACGTCAGCGGCGAGGCGATCTACATCGACGAT
CGCCTGGAGTTTCCCAACCAGTTGCACGTCTATGCGCGCCTGAGCGAGCGCGCCCACGCCCGCATCACCCGC
CTCGACGTGACGCCCTGCTACCAGTTCCCCGGCGTCGCCATCGCCCTCACCGCCGCCGACGTTCCCGGCCAG
CTCGACATCGGCCCGGTGGTGGCCGGCGACCCGCTGCTGGCCGATGGCAAGGTGGAGTATGTCGGACAGATG
GTCCTGGCGGTCGCCGCCGACAGCCTGGAAACCGCGCGCAAGGCGGCCATGGCGGCGATCGTCGAGTACGAA
GACCTGGAACCGGTGCTCGACGTGGTCGAGGCCCTGCGCAAGCGCCATTTCGTCCTCGACAGCCACCAGCAC
CGCATCGGCGACTCCGCCGCCGCGCTGGCCGGCGCGCCGCATCGCCTGCAAGGCACGCTGCACATCGGCGGC
CAGGAGCATTTCTACCTGGAAACGCAGATTTCCTCGGTAATGCCCAGCGAAGACGGCGGCATGATCGTCTAT
TGCTCGACGCAGAACCCCACCGAAGTGCAGAAGCTGGTGGCCGAGGTCCTCGGGGTTTCCTTCAACCGCATC
GTCATCGACATGCGCCGCATGGGCGGCGGCTTCGGCGGCAAGGAAACCCAGGCCGCGGCGCCGGCCTGCCTG
TGCGCGGTGGTCGCCTACCACACCGGGCGTCCGGCGAAGATGCGCCTGCCGCGCATGGAGGACATGCAGATC
ACCGGCAAGCGTCACCCGTTCTACGTCGAATACGACGTCGGCTTCGACGACGATGGCCGCCTGCACGGCATC
CAGATCGACCTGGCCGGCAACTGCGGCTATTCGCCGGACCTCTCCGGCTCGATCGTCGACCGCGCCATGTTC
CACTCGGACAACGCCTACTTCCTCGGCAACGCCACCATCAACGGCCACCGTTGCAAGACCAACACCGCCTCG
AACACCGCCTACCGCGGTTTCGGCGGGCCCCAGGGAATGGTCGCCATCGAGGAGATCATGGACGCCGTGGCC
CGCAGCCTCGGCAAGGATCCGCTGGAGGTGCGCAAGCTCAACTACTACGGCAAGGACGAGCGCAACGTCACC
CATTACCACCAGACCGTCGAGCACAACCTGCTGGCGGAGATGACTGCCGAGCTGGAAGCGAGCAGCGAGTAC
GCCCGCCGCCGCGAGGAAATCCGTGCGTTCAATGCCGCCAGCCCGGTCCTGAAGAAAGGCCTGGCGCTGACC
CCGGTGAAGTTCGGCATTTCGTTCACCGCGACCTTCCTCAACCAGGCAGGTGCGCTGATCCACATCTATACC
GACGGCAGCATCCACCTGAACCATGGCGGCACCGAAATGGGCCAGGGCCTCAACACCAAGGTCGCCCAGGTG
GTCGCCGAGGTCTTCCAGGTCGACGTGGAGCGCATCCAGATCACCGCCACCAATACCGACAAGGTGCCCAAC
ACCTCGCCCACCGCCGCCTCCTCGGGCACCGACCTGAACGGCAAGGCCGCGCAGAATGCCGCCGAAACCATC
AAGCGGCGCCTGGTGGAGTTCGCCGCGCGGCACTGGAAGGTCAGCGAGGAAGACGTCGAGTTCCGCAACAAC
CAGGTGCGTATCCGCGAGCTGATCCTGCCGTTCGAGGAACTGGTCCAGCAGGCCTACTTCGGCCAGGTCTCG
TTGTCCAGCACCGGCTTCTACCGCACGCCGAAGATCTTCTACGACCGCGAACAGGCCCGTGGCCGGCCCTTC
TATTATTTCGCCTACGGCGCCGCCTGCTCGGAGGTGATAGTCGACACCCTCACCGGCGAATACCGCATGCTG
CGCACCGACATCCTGCATGACGTCGGCGACTCGCTGAACCCGGCCATCGACATCGGCCAGGTTGAAGGCGGC
TTCGTCCAGGGCATGGGCTGGCTGACCATGGAGGAACTGGTCTGGAACGCCAAGGGCAAGCTGATGACCAGC
GGCCCGGCCAGCTACAAGATTCCCGCCGTCGCCGACATGCCGCTGGACCTGCGGGTGAAACTGCTGGAGAAC
CGCAAGAATCCGGAGCAGACCGTGTTCCATTCCAAGGCCGTGGGCGAGCCGCCGTTCATGCTCGGCATCTCG
GTCTGGTGCGCGATCAAGGACGCCGTGGCCAGCCTCGCCGACTACCGCGCGCAACCCGCCATCGACGCGCCG
GCGACGCCCGAGCGGGTGCTCTGGGGCGTGGAACAGATGCGCCGGCTGAAGGCCGCCCAGGCACAAGCGGCG
GACGCCGCGGTCGAACCGGCCTGA
Translation:
MSNHRKPHKSQEELADLFRAELTTGVGRSVKHESAPKHVSGEAIYIDDRLEFPNQLHVYARLSERAHARITR
LDVTPCYQFPGVAIALTAADVPGQLDIGPVVAGDPLLADGKVEYVGQMVLAVAADSLETARKAAMAAIVEYE
DLEPVLDVVEALRKRHFVLDSHQHRIGDSAAALAGAPHRLQGTLHIGGQEHFYLETQISSVMPSEDGGMIVY
CSTQNPTEVQKLVAEVLGVSFNRIVIDMRRMGGGFGGKETQAAAPACLCAVVAYHTGRPAKMRLPRMEDMQI
TGKRHPFYVEYDVGFDDDGRLHGIQIDLAGNCGYSPDLSGSIVDRAMFHSDNAYFLGNATINGHRCKTNTAS
NTAYRGFGGPQGMVAIEEIMDAVARSLGKDPLEVRKLNYYGKDERNVTHYHQTVEHNLLAEMTAELEASSEY
ARRREEIRAFNAASPVLKKGLALTPVKFGISFTATFLNQAGALIHIYTDGSIHLNHGGTEMGQGLNTKVAQV
VAEVFQVDVERIQITATNTDKVPNTSPTAASSGTDLNGKAAQNAAETIKRRLVEFAARHWKVSEEDVEFRNN
QVRIRELILPFEELVQQAYFGQVSLSSTGFYRTPKIFYDREQARGRPFYYFAYGAACSEVIVDTLTGEYRML
RTDILHDVGDSLNPAIDIGQVEGGFVQGMGWLTMEELVWNAKGKLMTSGPASYKIPAVADMPLDLRVKLLEN
RKNPEQTVFHSKAVGEPPFMLGISVWCAIKDAVASLADYRAQPAIDAPATPERVLWGVEQMRRLKAAQAQAA
DAAVEPA*
AnnotationID:188GeneID:178
AnnotatorUID: danlee
Modification Date/Time: 2004-02-04 17:05:31
Gene Name:xdhB
Confidence Code:2
GeneProduct:xanthine dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG0430, COG4631
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:359




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17016




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA1523_CDS.cgi


    		




 
URL:

















    ReferenceID:17501




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:178
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
315
                           PA1523_tr
                           translation of PA1523
                           799
                           99.74
                           99.99
                           0
                           4126.0
     

     
     
20841
                           gb|AAG04912.1|AE004580_12
                           (AE004580) xanthine dehydrogenase [Pseudomonas aeruginosa PAO1]
                           799
                           99.74
                           99.99
                           0
                           4126.0
     

     
     
20842
                           gb|AAN69859.1|AE016625_2
                           (AE016790) xanthine dehydrogenase, XdhB subunit [Pseudomonas putida KT2440]
                           801
                           83.02
                           90.38
                           4
                           3505.0
     

     
     
20843
                           gb|AAO57130.1|
                           (AE016869) xanthine dehydrogenase, C-terminal subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           799
                           80.22
                           88.61
                           7
                           3395.0
     

     
     
20844
                           gb|AAK24587.1|
                           (AE005929) xanthine dehydrogenase, C-terminal subunit [Caulobacter crescentus CB15]
                           804
                           57.46
                           70.27
                           30
                           2288.0
     

     






      

          
GC ORFID: 43180How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1523Glimmer Score: 

          
Start: 966973Stop: 964574

          
Length: 2400


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1523 translation of PA1523Homolog Bit Score 1593.0

          
Other Homologs:  t_PA1523 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTAACCATCGCAAGCCGCACAAGAGCCAGGAAGAGCTGGCCGACCTGTTCCGCGCCGAGCTGACCACC 
GGAGTCGGCCGCAGCGTCAAGCACGAAAGCGCCCCCAAGCACGTCAGCGGCGAGGCGATCTACATCGACGAT 
CGCCTGGAGTTTCCCAACCAGTTGCACGTCTATGCGCGCCTGAGCGAGCGCGCCCACGCCCGCATCACCCGC 
CTCGACGTGACGCCCTGCTACCAGTTCCCCGGCGTCGCCATCGCCCTCACCGCCGCCGACGTTCCCGGCCAG 
CTCGACATCGGCCCGGTGGTGGCCGGCGACCCGCTGCTGGCCGATGGCAAGGTGGAGTATGTCGGACAGATG 
GTCCTGGCGGTCGCCGCCGACAGCCTGGAAACCGCGCGCAAGGCGGCCATGGCGGCGATCGTCGAGTACGAA 
GACCTGGAACCGGTGCTCGACGTGGTCGAGGCCCTGCGCAAGCGCCATTTCGTCCTCGACAGCCACCAGCAC 
CGCATCGGCGACTCCGCCGCCGCGCTGGCCGGCGCGCCGCATCGCCTGCAAGGCACGCTGCACATCGGCGGC 
CAGGAGCATTTCTACCTGGAAACGCAGATTTCCTCGGTAATGCCCAGCGAAGACGGCGGCATGATCGTCTAT 
TGCTCGACGCAGAACCCCACCGAAGTGCAGAAGCTGGTGGCCGAGGTCCTCGGGGTTTCCTTCAACCGCATC 
GTCATCGACATGCGCCGCATGGGCGGCGGCTTCGGCGGCAAGGAAACCCAGGCCGCGGCGCCGGCCTGCCTG 
TGCGCGGTGGTCGCCTACCACACCGGGCGTCCGGCGAAGATGCGCCTGCCGCGCATGGAGGACATGCAGATC 
ACCGGCAAGCGTCACCCGTTCTACGTCGAATACGACGTCGGCTTCGACGACGATGGCCGCCTGCACGGCATC 
CAGATCGACCTGGCCGGCAACTGCGGCTATTCGCCGGACCTCTCCGGCTCGATCGTCGACCGCGCCATGTTC 
CACTCGGACAACGCCTACTTCCTCGGCAACGCCACCATCAACGGCCACCGTTGCAAGACCAACACCGCCTCG 
AACACCGCCTACCGCGGTTTCGGCGGGCCCCAGGGAATGGTCGCCATCGAGGAGATCATGGACGCCGTGGCC 
CGCAGCCTCGGCAAGGATCCGCTGGAGGTGCGCAAGCTCAACTACTACGGCAAGGACGAGCGCAACGTCACC 
CATTACCACCAGACCGTCGAGCACAACCTGCTGGCGGAGATGACTGCCGAGCTGGAAGCGAGCAGCGAGTAC 
GCCCGCCGCCGCGAGGAAATCCGTGCGTTCAATGCCGCCAGCCCGGTCCTGAAGAAAGGCCTGGCGCTGACC 
CCGGTGAAGTTCGGCATTTCGTTCACCGCGACCTTCCTCAACCAGGCAGGTGCGCTGATCCACATCTATACC 
GACGGCAGCATCCACCTGAACCATGGCGGCACCGAAATGGGCCAGGGCCTCAACACCAAGGTCGCCCAGGTG 
GTCGCCGAGGTCTTCCAGGTCGACGTGGAGCGCATCCAGATCACCGCCACCAATACCGACAAGGTGCCCAAC 
ACCTCGCCCACCGCCGCCTCCTCGGGCACCGACCTGAACGGCAAGGCCGCGCAGAATGCCGCCGAAACCATC 
AAGCGGCGCCTGGTGGAGTTCGCCGCGCGGCACTGGAAGGTCAGCGAGGAAGACGTCGAGTTCCGCAACAAC 
CAGGTGCGTATCCGCGAGCTGATCCTGCCGTTCGAGGAACTGGTCCAGCAGGCCTACTTCGGCCAGGTCTCG 
TTGTCCAGCACCGGCTTCTACCGCACGCCGAAGATCTTCTACGACCGCGAACAGGCCCGTGGCCGGCCCTTC 
TATTATTTCGCCTACGGCGCCGCCTGCTCGGAGGTGATAGTCGACACCCTCACCGGCGAATACCGCATGCTG 
CGCACCGACATCCTGCATGACGTCGGCGACTCGCTGAACCCGGCCATCGACATCGGCCAGGTTGAAGGCGGC 
TTCGTCCAGGGCATGGGCTGGCTGACCATGGAGGAACTGGTCTGGAACGCCAAGGGCAAGCTGATGACCAGC 
GGCCCGGCCAGCTACAAGATTCCCGCCGTCGCCGACATGCCGCTGGACCTGCGGGTGAAACTGCTGGAGAAC 
CGCAAGAATCCGGAGCAGACCGTGTTCCATTCCAAGGCCGTGGGCGAGCCGCCGTTCATGCTCGGCATCTCG 
GTCTGGTGCGCGATCAAGGACGCCGTGGCCAGCCTCGCCGACTACCGCGCGCAACCCGCCATCGACGCGCCG 
GCGACGCCCGAGCGGGTGCTCTGGGGCGTGGAACAGATGCGCCGGCTGAAGGCCGCCCAGGCACAAGCGGCG 
GACGCCGCGGTCGAACCGGCCTGA