ViewGene
Locus Name:
GeneID:
Location:

GeneID:176
TrivialName: PA14_67230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67230
PAO1 Ortholog Locus:PA5090
Sequence Length:2373
Protein Length:790
Start: 6004104
Stop: 6001732
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08475.1|AE004921_12 (AE004921) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 780/790 (98%), Positives = 784/790 (99%)
Sequence:
ATGTTCGCCCCCGCCAACCAGACGCACTTCAGCCTTCGCATCGAAAACCTCCGGCACGACTTCCAGGTACTC
GCCTTCCGCGGTCGCGAAGCCATCAGCCAGCCCTTTCGCTTCGACCTGGAGCTGGTCAGCGAGCGATCCGAC
CTGGACCTCGACGCGCTGCTGCACCAGCCGGCCTTCCTGATCCTCTCGCCGAGCGGGCAAGGGGTCCACGGA
CAGCTCACCAGCATCGCCCAGGGGGACTCCGGCAAGCGCCTGACCGGCTATCGCGCGACCCTGGAGCCGCGC
CTGGCCTACCTGGGGCTGTGCAGCGACCAACGCATCTTCCAGCGCCTCAGCGTGCCGGAAATCATCGGCCGG
GTGCTGGAGGGCCACGGCATTCTCGCCGACGCCTACCGCTTCCAGCTGGGCCCGACGCCGTACCCGGCCCGC
GAATACTGCACGCAGTACGACGAAACCGACCTGGCGTTCCTCAGCAGGCTCTGCGAGGAGGAAGGCATCCAT
TACCACCATGAGTTTTCTGCCCAGGGCCATATGCTGGTCTTCGGCGACGACCAGACCTCCTTTCCGCGGCTG
CAACGCCCCGTCGCCTACGTGCAGGACGCCGGGCTGGTCGCCGACCAGCCGGTGGTCAAGCGCTTCGGCGTG
CGCTTCGACACCCGTGCCAGCCGGGTTACCCGGCGCGACTACGACTTCGAGCAACCCGCGTTGCAGATGCAG
GCCGCCCATGGCCCGCAGCCCGGGGCGCAGCAACCGGACCTGGAGGACTACGACTATCCCGGCCGCTTCACC
CACCGCGAGCGCGGCAAGCACCTGAGCCGGCGCGCGCTGGAACGGCATCGCGCCGACTACCTACAGGCCAGG
GGCGAAAGCGACGAACCGGCGCTGCTCAGCGGACACTTCCTGACGCTGTCCGCGCATCCCTGCGGCGAATGG
AACGATCTCTGGCTGCTTACTGAGGTTCTCCACGAAGGGCGGCAGCCGCAGGTACTGGAAGAGTCGATCGAC
AGCGACGTCGCGCAGGGCCGGGGCGATTTCCGCCAGGGCTATCGCAACCGTTTCGTCGCCACTCCCTGGAGC
GCGCATTTCCGCCCCCCGCTGGAGCATCCCAGGCCACGCGTGCTGGGCTGCCAGACAGCGGTCGTGACCGGC
CCCGCCGGCGAGACCATCCACTGCGACCAATACGGCCGGGTCAAGGTGCAGTTCTTCTGGGATCGCCTCGGC
CAGGCCGACGACAACACCAGTTGCTGGTTGCGCGTCGCCTCCAACTGGGCGGGCAAACGCTATGGCGGCGTC
GCCATCCCGCGGGTGGGCATGGAAGTCCTGGTGGGTTTCCTGGAGGGCGATCCGGATCAGCCGCTGGTCACC
GGCTGCCTCTACCACAGCGAAAACCGGGTGCCCTACGAACTGCCGCAGAACAAGACCCGCAGCGTTTTCAAG
ACCGACAGCTACCCCGGCGGCGGCGGTTTCAACGAACTGCGCATCGAGGACCGCAAGGGCCAGGAACAGATC
TTCGTCCACGCCCAGCGCGACTGGGACGAGAACATCGAGCACGACCAGAAGATCCGCGTCGGCCATGAGCGC
CACGACACGGTCGAGGGCGATAGCTACAGCGAGTTCAGGGCCGAGGAACAGCGCACGGTCCACGCCGACCGC
AAGGTCGAACTGAAGGCGGCCGACCACCTCAGCGTCGCCGACGCGTTGCACCTGAGGATCGGCACCGGCCAG
TTCGTCGAGGCGGGCGACGAGATCCATTTCAAGGCCGGCGACAAGGTAGTGATCGAGGCAGGCATGGAGCTG
ACCCTAAAGGGCGGTGGCAGCTTCGCCAGGCTCGACCCGGGCGGTGTCACCCTTGACGGCGCCCAGGTGATG
ATCAACAGCGGCGGCAGCCCCGGCATCGGTAGCGGCGTTCGCGCGCTGTCGCCGCTGCAACCGCTCGCGGCC
GACGCCGCGGCGGCGGGAGGCGCCTTGTTGGGAGCCATCGCCCAGAAGATCGGCGAAGCGCCGCAGAAACTC
CTGCGTTTCGAACTCAGTCCGTTGCCCGGCGTGGCATCGGCGGCCAGGCAACCGTATCGGCTCTACGCCAAC
GGTGCCCTCAAGGAGGAGGGCATCGCCGACGAAGGCGGCGCAATCAGCTTCGAACCGCTTCCGGGCGAACGC
ACCTATCGTATCGAGACGGCCAATGGCCACGCCTACGAAGTGGAGATGGTCGACCGGCCGGACGCACTGCAG
GTCGACGATCGGCTCGCCCAACAGGGGTTCCGCGACTACCGGGCGGAAATGCCCCAGCACAAGCCGCGTTCC
GCCCCGGACGCCTACCGGCGCGACGCCTCGCGGCCCGGCGCCGCCGACAAGGATGACCCCACGCCATGA
Translation:
MFAPANQTHFSLRIENLRHDFQVLAFRGREAISQPFRFDLELVSERSDLDLDALLHQPAFLILSPSGQGVHG
QLTSIAQGDSGKRLTGYRATLEPRLAYLGLCSDQRIFQRLSVPEIIGRVLEGHGILADAYRFQLGPTPYPAR
EYCTQYDETDLAFLSRLCEEEGIHYHHEFSAQGHMLVFGDDQTSFPRLQRPVAYVQDAGLVADQPVVKRFGV
RFDTRASRVTRRDYDFEQPALQMQAAHGPQPGAQQPDLEDYDYPGRFTHRERGKHLSRRALERHRADYLQAR
GESDEPALLSGHFLTLSAHPCGEWNDLWLLTEVLHEGRQPQVLEESIDSDVAQGRGDFRQGYRNRFVATPWS
AHFRPPLEHPRPRVLGCQTAVVTGPAGETIHCDQYGRVKVQFFWDRLGQADDNTSCWLRVASNWAGKRYGGV
AIPRVGMEVLVGFLEGDPDQPLVTGCLYHSENRVPYELPQNKTRSVFKTDSYPGGGGFNELRIEDRKGQEQI
FVHAQRDWDENIEHDQKIRVGHERHDTVEGDSYSEFRAEEQRTVHADRKVELKAADHLSVADALHLRIGTGQ
FVEAGDEIHFKAGDKVVIEAGMELTLKGGGSFARLDPGGVTLDGAQVMINSGGSPGIGSGVRALSPLQPLAA
DAAAAGGALLGAIAQKIGEAPQKLLRFELSPLPGVASAARQPYRLYANGALKEEGIADEGGAISFEPLPGER
TYRIETANGHAYEVEMVDRPDALQVDDRLAQQGFRDYRAEMPQHKPRSAPDAYRRDASRPGAADKDDPTP*
AnnotationID:186GeneID:176
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 06:06:03
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5090
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58858.1| (AE016875) Rhs element Vgr protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 680

 Score =  910 bits (2351), Expect = 0.0
 Identities = 444/660 (67%), Positives = 521/660 (78%), Gaps = 5/660 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:355




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17497




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34971




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:176_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:176
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
311
                           PA5090_tr
                           translation of PA5090
                           790
                           98.73
                           99.24
                           0
                           4133.0
     

     
     
20829
                           gb|AAG08475.1|AE004921_12
                           (AE004921) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           790
                           98.73
                           99.24
                           0
                           4133.0
     

     
     
312
                           PA5266_tr
                           translation of PA5266
                           800
                           59.87
                           68.62
                           119
                           2474.0
     

     
     
20830
                           gb|AAG08651.1|AE004939_3
                           (AE004939) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           800
                           59.87
                           68.62
                           119
                           2474.0
     

     
     
313
                           PA3486_tr
                           translation of PA3486
                           834
                           57.67
                           68.34
                           70
                           2435.0
     

     






      

          
GC ORFID: 43178How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5090Glimmer Score: 

          
Start: 5267789Stop: 5265417

          
Length: 2373


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5090 translation of PA5090Homolog Bit Score 1596.0

          
Other Homologs:  t_PA3486 (ORF: BLASTX 933.0), t_PA5090 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCGCCCCCGCCAACCAGACGCACTTCAGCCTTCGCATCGAAAACCTCCGGCACGACTTCCAGGTACTC 
GCCTTCCGCGGTCGCGAAGCCATCAGCCAGCCCTTTCGCTTCGACCTGGAGCTGGTCAGCGAGCGATCCGAC 
CTGGACCTCGACGCGCTGCTGCACCAGCCGGCCTTCCTGATCCTCTCGCCGAGCGGGCAAGGGGTCCACGGA 
CAGCTCACCAGCATCGCCCAGGGGGACTCCGGCAAGCGCCTGACCGGCTATCGCGCGACCCTGGAGCCGCGC 
CTGGCCTACCTGGGGCTGTGCAGCGACCAACGCATCTTCCAGCGCCTCAGCGTGCCGGAAATCATCGGCCGG 
GTGCTGGAGGGCCACGGCATTCTCGCCGACGCCTACCGCTTCCAGCTGGGCCCGACGCCGTACCCGGCCCGC 
GAATACTGCACGCAGTACGACGAAACCGACCTGGCGTTCCTCAGCAGGCTCTGCGAGGAGGAAGGCATCCAT 
TACCACCATGAGTTTTCTGCCCAGGGCCATATGCTGGTCTTCGGCGACGACCAGACCTCCTTTCCGCGGCTG 
CAACGCCCCGTCGCCTACGTGCAGGACGCCGGGCTGGTCGCCGACCAGCCGGTGGTCAAGCGCTTCGGCGTG 
CGCTTCGACACCCGTGCCAGCCGGGTTACCCGGCGCGACTACGACTTCGAGCAACCCGCGTTGCAGATGCAG 
GCCGCCCATGGCCCGCAGCCCGGGGCGCAGCAACCGGACCTGGAGGACTACGACTATCCCGGCCGCTTCACC 
CACCGCGAGCGCGGCAAGCACCTGAGCCGGCGCGCGCTGGAACGGCATCGCGCCGACTACCTACAGGCCAGG 
GGCGAAAGCGACGAACCGGCGCTGCTCAGCGGACACTTCCTGACGCTGTCCGCGCATCCCTGCGGCGAATGG 
AACGATCTCTGGCTGCTTACTGAGGTTCTCCACGAAGGGCGGCAGCCGCAGGTACTGGAAGAGTCGATCGAC 
AGCGACGTCGCGCAGGGCCGGGGCGATTTCCGCCAGGGCTATCGCAACCGTTTCGTCGCCACTCCCTGGAGC 
GCGCATTTCCGCCCCCCGCTGGAGCATCCCAGGCCACGCGTGCTGGGCTGCCAGACAGCGGTCGTGACCGGC 
CCCGCCGGCGAGACCATCCACTGCGACCAATACGGCCGGGTCAAGGTGCAGTTCTTCTGGGATCGCCTCGGC 
CAGGCCGACGACAACACCAGTTGCTGGTTGCGCGTCGCCTCCAACTGGGCGGGCAAACGCTATGGCGGCGTC 
GCCATCCCGCGGGTGGGCATGGAAGTCCTGGTGGGTTTCCTGGAGGGCGATCCGGATCAGCCGCTGGTCACC 
GGCTGCCTCTACCACAGCGAAAACCGGGTGCCCTACGAACTGCCGCAGAACAAGACCCGCAGCGTTTTCAAG 
ACCGACAGCTACCCCGGCGGCGGCGGTTTCAACGAACTGCGCATCGAGGACCGCAAGGGCCAGGAACAGATC 
TTCGTCCACGCCCAGCGCGACTGGGACGAGAACATCGAGCACGACCAGAAGATCCGCGTCGGCCATGAGCGC 
CACGACACGGTCGAGGGCGATAGCTACAGCGAGTTCAGGGCCGAGGAACAGCGCACGGTCCACGCCGACCGC 
AAGGTCGAACTGAAGGCGGCCGACCACCTCAGCGTCGCCGACGCGTTGCACCTGAGGATCGGCACCGGCCAG 
TTCGTCGAGGCGGGCGACGAGATCCATTTCAAGGCCGGCGACAAGGTAGTGATCGAGGCAGGCATGGAGCTG 
ACCCTAAAGGGCGGTGGCAGCTTCGCCAGGCTCGACCCGGGCGGTGTCACCCTTGACGGCGCCCAGGTGATG 
ATCAACAGCGGCGGCAGCCCCGGCATCGGTAGCGGCGTTCGCGCGCTGTCGCCGCTGCAACCGCTCGCGGCC 
GACGCCGCGGCGGCGGGAGGCGCCTTGTTGGGAGCCATCGCCCAGAAGATCGGCGAAGCGCCGCAGAAACTC 
CTGCGTTTCGAACTCAGTCCGTTGCCCGGCGTGGCATCGGCGGCCAGGCAACCGTATCGGCTCTACGCCAAC 
GGTGCCCTCAAGGAGGAGGGCATCGCCGACGAAGGCGGCGCAATCAGCTTCGAACCGCTTCCGGGCGAACGC 
ACCTATCGTATCGAGACGGCCAATGGCCACGCCTACGAAGTGGAGATGGTCGACCGGCCGGACGCACTGCAG 
GTCGACGATCGGCTCGCCCAACAGGGGTTCCGCGACTACCGGGCGGAAATGCCCCAGCACAAGCCGCGTTCC 
GCCCCGGACGCCTACCGGCGCGACGCCTCGCGGCCCGGCGCCGCCGACAAGGATGACCCCACGCCATGA