ViewGene
Locus Name:
GeneID:
Location:

GeneID:1753
TrivialName: PA14_47000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47000
PAO1 Ortholog Locus:PA1334
Sequence Length:1113
Protein Length:370
Start: 4187705
Stop: 4188817
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04723.1|AE004562_10 (AE004562) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 366/370 (98%), Positives = 368/370 (99%)
Sequence:
ATGCTGTTCAGCCCCTATGCCTTTGGCCACCTGACCCTCCCCAATCGCATCGTCATGCCGCCGATGACCCGT
TCCCGAGCCGCCAGTGGTGAAGTCGCCACCGCGCTGATGGCCGAGTACTACAGCCAGCGCGCCGGCGCCGGC
CTGATCGTTTCCGAAGGCACCCAGATCAGCCGGCAGGGCCAGGGCTACGCCTGGACACCGGGCATCCACAGC
GCCGAGCAGGTCGCCGGCTGGCGCCAGGTCACCGACGCGGTGCACGCCGCCGGCGGGCGCATCTTCGCCCAG
CTCTGGCACGTCGGCAGGGTCTCGCACACCTCGCTGCAACCGGGCAACGCCGCCCCGGTGTCCTCCTCGGCG
CTGGTGGCCGAAGGCGTGAAGGTCTTCGTCGATCCCCAGGGCCGCGGAGCGCAGGCCGGCGGCGGCGAGATG
GTCCAGCACTCGGCGCCGCGTGCGCTGGCCGTGGAGGAAATCCGGGAGATCGTCGCCGACTATGCCCAGGCC
GCACGCAACGCCCTCGACGCCGGCTTCGACGGGGTCGAGCTGCACGGCGCCAACGGCTACCTGATCAACCAG
TTCATCGACTCCCAGGCCAATGCGCGCAACGACCAATACGGCGGCTCGCTGGAGAACCGCCTGCGCTTCCTC
CGCGAAGTCGCCGAGGCGGTCACCGCGGTGGTCGGCAGGGAGCGCATCGGCGTGCGCCTGGCGCCGCTGACC
ACCCTGCAGGGCGCGGTCGACGACACCCCGCAAGCCACCTACCTGGCCGCGGCGCGGCTACTGGACGAGATC
GGCGTGGCCTACATCCACATCGCCGAGGCCGACTGGGAAGACGCCCCGGCCATGCCGGCGGCGTTCAAGGAA
GCGTTGCGCATCGTCTACCGTGGCAGCCTGATCTACTCCGGCATGTACACCAAGGCGCGCGCCGAGGAAGCC
CTGGCCAAGGGCTGGGCCGACCTGATCGGCTTCGGCCGGCCGTTCATCGCCAACCCTGACCTGCCCTACCGC
CTGGAGCACGACCTGGCGCTGGCCGACGGCGACCGCTCGACCTACTTCGGTGGCGGCGCCGCCGGCTACACC
GACTACCCGAGCCTGCCGCAGGCGGCCGGTTGA
Translation:
MLFSPYAFGHLTLPNRIVMPPMTRSRAASGEVATALMAEYYSQRAGAGLIVSEGTQISRQGQGYAWTPGIHS
AEQVAGWRQVTDAVHAAGGRIFAQLWHVGRVSHTSLQPGNAAPVSSSALVAEGVKVFVDPQGRGAQAGGGEM
VQHSAPRALAVEEIREIVADYAQAARNALDAGFDGVELHGANGYLINQFIDSQANARNDQYGGSLENRLRFL
REVAEAVTAVVGRERIGVRLAPLTTLQGAVDDTPQATYLAAARLLDEIGVAYIHIAEADWEDAPAMPAAFKE
ALRIVYRGSLIYSGMYTKARAEEALAKGWADLIGFGRPFIANPDLPYRLEHDLALADGDRSTYFGGGAAGYT
DYPSLPQAAG*
AnnotationID:1762GeneID:1753
AnnotatorUID: diggins
Modification Date/Time: 2005-05-26 09:09:12
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase, FMN-binding
Cell Localization:()
Synonyms:PA1334
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1902,pfam00724
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC62116.1| (AP005086) N-ethylmaleimide reductase [Vibrio parahaemolyticus]
          Length = 366

 Score =  441 bits (1133), Expect = e-123
 Identities = 222/364 (60%), Positives = 267/364 (73%), Gaps = 7/364 (1%)

>gb|AAN55488.1|AE015686_9 (AE015686) oxidoreductase, FMN-binding [Shewanella oneidensis MR-1]
          Length = 365

 Score =  434 bits (1115), Expect = e-121
 Identities = 225/364 (61%), Positives = 267/364 (73%), Gaps = 7/364 (1%)

>gb|AAN68098.1|AE016441_10 (AE016783) NADH-dependent flavin oxidoreductase, Oye family
           [Pseudomonas putida KT2440]
          Length = 374

 Score =  432 bits (1111), Expect = e-120
 Identities = 215/371 (57%), Positives = 271/371 (73%), Gaps = 13/371 (3%)






 
Structural Features:
COG1902, NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family 
[Energy production and conversion]
CD-Length = 363 residues,  98.3% aligned
Score =  331 bits (849), Expect = 1e-91
Identities = 157/379 (41%), Positives = 211/379 (55%), Gaps = 33/379 (8%)

pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase family.
CD-Length = 335 residues,  99.4% aligned
Score =  275 bits (704), Expect = 7e-75
Identities = 135/354 (38%), Positives = 185/354 (52%), Gaps = 33/354 (9%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3509




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20656




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37468




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1753_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1753
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3088
                           PA1334_tr
                           translation of PA1334
                           370
                           98.91
                           99.45
                           0
                           1886.0
     

     
     
95390
                           gb|AAG04723.1|AE004562_10
                           (AE004562) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           370
                           98.91
                           99.45
                           0
                           1886.0
     

     
     
95391
                           emb|CAE13819.1|
                           (BX571864) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           374
                           68.71
                           80.74
                           8
                           1367.0
     

     
     
95393
                           gb|AAN55488.1|AE015686_9
                           (AE015686) oxidoreductase, FMN-binding [Shewanella oneidensis MR-1]
                           377
                           60.47
                           71.61
                           19
                           1122.0
     

     
     
95392
                           dbj|BAC62116.1|
                           (AP005086) N-ethylmaleimide reductase [Vibrio parahaemolyticus]
                           374
                           59.89
                           71.92
                           12
                           1138.0
     

     






      

          
GC ORFID: 44755How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1334Glimmer Score: 

          
Start: 766204Stop: 765092

          
Length: 1113


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1334 translation of PA1334Homolog Bit Score 731.0

          
Other Homologs:  t_PA2932 (ORF: BLASTX 400.0), psyr_15may02_Scaffold10_revised_gene1546 (ORF: BLASTX 319.0), psyr_15may02_Scaffold7_revised_gene7163 (ORF: BLASTX 304.0), t_PA4356 (ORF: BLASTX 303.0), psyr_15may02_Scaffold12_revised_gene1974 (ORF: BLASTX 292.0), t_PA0840 (ORF: BLASTX 179.0), psyr_15may02_Scaffold3_revised_gene4342 (ORF: BLASTX 166.0), t_PA1334 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGTTCAGCCCCTATGCCTTTGGCCACCTGACCCTCCCCAATCGCATCGTCATGCCGCCGATGACCCGT 
TCCCGAGCCGCCAGTGGTGAAGTCGCCACCGCGCTGATGGCCGAGTACTACAGCCAGCGCGCCGGCGCCGGC 
CTGATCGTTTCCGAAGGCACCCAGATCAGCCGGCAGGGCCAGGGCTACGCCTGGACACCGGGCATCCACAGC 
GCCGAGCAGGTCGCCGGCTGGCGCCAGGTCACCGACGCGGTGCACGCCGCCGGCGGGCGCATCTTCGCCCAG 
CTCTGGCACGTCGGCAGGGTCTCGCACACCTCGCTGCAACCGGGCAACGCCGCCCCGGTGTCCTCCTCGGCG 
CTGGTGGCCGAAGGCGTGAAGGTCTTCGTCGATCCCCAGGGCCGCGGAGCGCAGGCCGGCGGCGGCGAGATG 
GTCCAGCACTCGGCGCCGCGTGCGCTGGCCGTGGAGGAAATCCGGGAGATCGTCGCCGACTATGCCCAGGCC 
GCACGCAACGCCCTCGACGCCGGCTTCGACGGGGTCGAGCTGCACGGCGCCAACGGCTACCTGATCAACCAG 
TTCATCGACTCCCAGGCCAATGCGCGCAACGACCAATACGGCGGCTCGCTGGAGAACCGCCTGCGCTTCCTC 
CGCGAAGTCGCCGAGGCGGTCACCGCGGTGGTCGGCAGGGAGCGCATCGGCGTGCGCCTGGCGCCGCTGACC 
ACCCTGCAGGGCGCGGTCGACGACACCCCGCAAGCCACCTACCTGGCCGCGGCGCGGCTACTGGACGAGATC 
GGCGTGGCCTACATCCACATCGCCGAGGCCGACTGGGAAGACGCCCCGGCCATGCCGGCGGCGTTCAAGGAA 
GCGTTGCGCATCGTCTACCGTGGCAGCCTGATCTACTCCGGCATGTACACCAAGGCGCGCGCCGAGGAAGCC 
CTGGCCAAGGGCTGGGCCGACCTGATCGGCTTCGGCCGGCCGTTCATCGCCAACCCTGACCTGCCCTACCGC 
CTGGAGCACGACCTGGCGCTGGCCGACGGCGACCGCTCGACCTACTTCGGTGGCGGCGCCGCCGGCTACACC 
GACTACCCGAGCCTGCCGCAGGCGGCCGGTTGA